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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044302 ID=TCONS_00044302|Name=TCONS_00044302|organism=Clytia hemisphaerica|type=transcript|length=737bp
CCAGAAATGGAAAGAATTCATTAACAGCTCTTTAGGAAGAGAATTAGTTC
CGAATTGGAAAAGGCATTACATCAATGCAAACAATTTTGAATATCAGGTT
GAAgaggaagaaaatgaagaggaagaaagtgaaaatatttttttacgtgA
AGATTGGATGGATATAGCAGACCTGAATTCCATGCCCAGTAATGTTTCTA
CAGAAAATCAACAATATTGGACTGATTCTTATGATTCTTATACTCAAGAT
CAAATTAATGCAATGCCCTTTTGgattgaagagaaaaaaaagacttttga
aaacGATAATCCCACAGATTATAGTCAATATCAAGTTGAGAACTTAAATG
CAGAACAGCTCCAAGCTTACAATATTGTACATGATCATGCTCAAAATATA
AATGCTGACCCTTTACAAATGATAATTACCGGGATTGCGGGAAGTGGAAA
ATCATATTTAATAAATTGCATTAAAAAACTCCTTGGCAAAAAGTGTTTAT
TGACATCTTTTTTCGGTATCGCGGCTTTTAATATTAATGGAAGAACGTTG
CACAGTACTCTCAAATTGCCAATTCGAAGCAAATTAAAGCATGAACTCAA
AGGAAAGTCACTGGATAATTTACAAACTGGTCTTAAAGACATAGAGTATA
TTATTATTGATGAATTCTCTGTAGTAGGCCAAAGATTGCTAGGCTGGATA
GATAGTCGCTGTCGTCAAGCAACAGGAAAATTAGAAN Run BLAST on NCBI protein sequence of TCONS_00044302-protein >TCONS_00044302-protein ID=TCONS_00044302-protein|Name=TCONS_00044302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
QKWKEFINSSLGRELVPNWKRHYINANNFEYQVEEEENEEEESENIFLRE
DWMDIADLNSMPSNVSTENQQYWTDSYDSYTQDQINAMPFWIEEKKKTFE
NDNPTDYSQYQVENLNAEQLQAYNIVHDHAQNINADPLQMIITGIAGSGK
SYLINCIKKLLGKKCLLTSFFGIAAFNINGRTLHSTLKLPIRSKLKHELK
GKSLDNLQTGLKDIEYIIIDEFSVVGQRLLGWIDSRCRQATGKLE Run BLAST on NCBI transcript from alignment at sc0005331:3456..4192 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044302 ID=TCONS_00044302|Name=TCONS_00044302|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at sc0005331:3456..4192 (Clytia hemisphaerica)
NTTCTAATTTTCCTGTTGCTTGACGACAGCGACTATCTATCCAGCCTAGC
AATCTTTGGCCTACTACAGAGAATTCATCAATAATAATATACTCTATGTC
TTTAAGACCAGTTTGTAAATTATCCAGTGACTTTCCTTTGAGTTCATGCT
TTAATTTGCTTCGAATTGGCAATTTGAGAGTACTGTGCAACGTTCTTCCA
TTAATATTAAAAGCCGCGATACCGAAAAAAGATGTCAATAAACACTTTTT
GCCAAGGAGTTTTTTAATGCAATTTATTAAATATGATTTTCCACTTCCCG
CAATCCCGGTAATTATCATTTGTAAAGGGTCAGCATTTATATTTTGAGCA
TGATCATGTACAATATTGTAAGCTTGGAGCTGTTCTGCATTTAAGTTCTC
AACTTGATATTGACTATAATCTGTGGGATTATCgttttcaaaagtctttt
ttttctcttcaatcCAAAAGGGCATTGCATTAATTTGATCTTGAGTATAA
GAATCATAAGAATCAGTCCAATATTGTTGATTTTCTGTAGAAACATTACT
GGGCATGGAATTCAGGTCTGCTATATCCATCCAATCTTcacgtaaaaaaa
tattttcactttcttcctcttcattttcttcctcTTCAACCTGATATTCA
AAATTGTTTGCATTGATGTAATGCCTTTTCCAATTCGGAACTAATTCTCT
TCCTAAAGAGCTGTTAATGAATTCTTTCCATTTCTGG Coding sequence (CDS) from alignment at sc0005331:3456..4192 >TCONS_00044302 ID=TCONS_00044302|Name=TCONS_00044302|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0005331:3456..4192 (Clytia hemisphaerica)
TTCTAATTTTCCTGTTGCTTGACGACAGCGACTATCTATCCAGCCTAGCA
ATCTTTGGCCTACTACAGAGAATTCATCAATAATAATATACTCTATGTCT
TTAAGACCAGTTTGTAAATTATCCAGTGACTTTCCTTTGAGTTCATGCTT
TAATTTGCTTCGAATTGGCAATTTGAGAGTACTGTGCAACGTTCTTCCAT
TAATATTAAAAGCCGCGATACCGAAAAAAGATGTCAATAAACACTTTTTG
CCAAGGAGTTTTTTAATGCAATTTATTAAATATGATTTTCCACTTCCCGC
AATCCCGGTAATTATCATTTGTAAAGGGTCAGCATTTATATTTTGAGCAT
GATCATGTACAATATTGTAAGCTTGGAGCTGTTCTGCATTTAAGTTCTCA
ACTTGATATTGACTATAATCTGTGGGATTATCgttttcaaaagtcttttt
tttctcttcaatcCAAAAGGGCATTGCATTAATTTGATCTTGAGTATAAG
AATCATAAGAATCAGTCCAATATTGTTGATTTTCTGTAGAAACATTACTG
GGCATGGAATTCAGGTCTGCTATATCCATCCAATCTTcacgtaaaaaaat
attttcactttcttcctcttcattttcttcctcTTCAACCTGATATTCAA
AATTGTTTGCATTGATGTAATGCCTTTTCCAATTCGGAACTAATTCTCTT
CCTAAAGAGCTGTTAATGAATTCTTTCCATTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044302-exon-sc0005331-1491911889:3456..4192 | TCONS_00044302-exon-sc0005331-1491911889:3456..4192 | Clytia hemisphaerica | exon |
| TCONS_00044302-exon-sc0005331-1510915933:3456..4192 | TCONS_00044302-exon-sc0005331-1510915933:3456..4192 | Clytia hemisphaerica | exon |
| TCONS_00044302-exon-sc0005331-1575043694:3456..4192 | TCONS_00044302-exon-sc0005331-1575043694:3456..4192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005331 | supercontig | sc0005331:3456..4192 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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