TCONS_00044270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044270
Unique NameTCONS_00044270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044270 ID=TCONS_00044270|Name=TCONS_00044270|organism=Clytia hemisphaerica|type=transcript|length=447bp
GCACTCTTGGTAATCAAACAATTTCATGTTTTCAAACTTATGATTAATTT
ATTGTCTTATACAATATTTCTCTCTCGCTTTGGTTCTTTAAAGATTGTTT
TTTGCTTTACTAAAAATCTAACTTTTATCTTTTGAAATTAATGTCATTAT
TTGCAATATCTTTTTTGCGGGTTTGATATTTTATGGATTTAAATCCAAAT
GAAAACTCCGGCTGAGCCTTTTCACCTTGGAGAGAGGAACATTAAAACTT
TTTGTTTTTATTTTGTAAATATGTGATTTTTGAAAAATATATAACGGTAT
AAATGAGTGTTTCTTGCGCTCGGCAATCTCTCAAGTCATATTGTCTGTTG
AAATTTGTTGTATGCTATTTGTATTCTGTTCCTAcaaatgtaaattttga
caaataaaaGTTTTTACCAAATACAAGTTGTCTGTCTACAAAAGGAA
Run BLAST on NCBI

transcript from alignment at sc0005275:3319..3765

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044270 ID=TCONS_00044270|Name=TCONS_00044270|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0005275:3319..3765 (Clytia hemisphaerica)
TTCCTTTTGTAGACAGACAACTTGTATTTGGTAAAAACttttatttgtca
aaatttacatttgTAGGAACAGAATACAAATAGCATACAACAAATTTCAA
CAGACAATATGACTTGAGAGATTGCCGAGCGCAAGAAACACTCATTTATA
CCGTTATATATTTTTCAAAAATCACATATTTACAAAATAAAAACAAAAAG
TTTTAATGTTCCTCTCTCCAAGGTGAAAAGGCTCAGCCGGAGTTTTCATT
TGGATTTAAATCCATAAAATATCAAACCCGCAAAAAAGATATTGCAAATA
ATGACATTAATTTCAAAAGATAAAAGTTAGATTTTTAGTAAAGCAAAAAA
CAATCTTTAAAGAACCAAAGCGAGAGAGAAATATTGTATAAGACAATAAA
TTAATCATAAGTTTGAAAACATGAAATTGTTTGATTACCAAGAGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027906XLOC_027906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044270-exon-sc0005275-1491911889:3319..3765TCONS_00044270-exon-sc0005275-1491911889:3319..3765Clytia hemisphaericaexon
TCONS_00044270-exon-sc0005275-1510915933:3319..3765TCONS_00044270-exon-sc0005275-1510915933:3319..3765Clytia hemisphaericaexon
TCONS_00044270-exon-sc0005275-1575043694:3319..3765TCONS_00044270-exon-sc0005275-1575043694:3319..3765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005275supercontigsc0005275:3319..3765 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.547006	0.33069	1.61431	2.58348	2.54553	1.39673	2.39366	2.69469	0.662936	2.96057	0.316727	0.731913	0.526548	0.650442	0	0.192921	0.698559	0.372273	1.19057	1.20823	0.480602	0	0.381525	0	0.85164	1.22	0.24091	0.245309	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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