TCONS_00044246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044246
Unique NameTCONS_00044246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044246 ID=TCONS_00044246|Name=TCONS_00044246|organism=Clytia hemisphaerica|type=transcript|length=620bp
CACTAATGAAGCTGAGATTGGGATTACTTTTTGAGGACCTTGGTGACCGG
TTTGGAGTATCGAAGAGCTGTGCGTCCAAAATCTTTCAGAGCTGGATAAG
AGCTGGATAAGAGCCATGTCATTGTGTTTGAGATCATTGATTTATCTCCA
TGAGGAGGAAAATATACGAAACACCACGCCATCACGGTTCAGAGGGTTTC
ATAGATTAATTGGTATCATGGACTGTACCgaagtttttattgaaactcCA
AAAAGTTTAGAACTACAAAGTGCGACTGAGTGGAGTGAATATAAACATCA
CAACACTGCAAAAATCTTAATTAGTGTCTTACCCAACTCTTTGATCAGTT
ATGTTTCAGAGCCCTACACCGGAAGAATATCAGACAAGGCTATTGTAAAT
GAGACTGAGTTCCTGGACACTCTACCCCCATACTGTAGTCTTATGACAGA
TAAAGGTTTTAATATTGAACAAGAGTGTGCTCAAAAAAGCATACATCTAA
TTATTCCACCTGGAAGACGCGGTACTTCCCAAATGACTGAAGCGCAACTT
AAAAAGACAGCTCACATTGCTAAAGTTCGGATTTTGGTTGAACAGGTCAT
TCGTAGGGTGAAAACTTTCC
Run BLAST on NCBI

protein sequence of TCONS_00044246-protein

>TCONS_00044246-protein ID=TCONS_00044246-protein|Name=TCONS_00044246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MSLCLRSLIYLHEEENIRNTTPSRFRGFHRLIGIMDCTEVFIETPKSLEL
QSATEWSEYKHHNTAKILISVLPNSLISYVSEPYTGRISDKAIVNETEFL
DTLPPYCSLMTDKGFNIEQECAQKSIHLIIPPGRRGTSQMTEAQLKKTAH
IAKVRILVEQVIRRVKTF
Run BLAST on NCBI

transcript from alignment at sc0005245:3426..4045

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044246 ID=TCONS_00044246|Name=TCONS_00044246|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at sc0005245:3426..4045 (Clytia hemisphaerica)
GGAAAGTTTTCACCCTACGAATGACCTGTTCAACCAAAATCCGAACTTTA
GCAATGTGAGCTGTCTTTTTAAGTTGCGCTTCAGTCATTTGGGAAGTACC
GCGTCTTCCAGGTGGAATAATTAGATGTATGCTTTTTTGAGCACACTCTT
GTTCAATATTAAAACCTTTATCTGTCATAAGACTACAGTATGGGGGTAGA
GTGTCCAGGAACTCAGTCTCATTTACAATAGCCTTGTCTGATATTCTTCC
GGTGTAGGGCTCTGAAACATAACTGATCAAAGAGTTGGGTAAGACACTAA
TTAAGATTTTTGCAGTGTTGTGATGTTTATATTCACTCCACTCAGTCGCA
CTTTGTAGTTCTAAACTTTTTGgagtttcaataaaaacttcGGTACAGTC
CATGATACCAATTAATCTATGAAACCCTCTGAACCGTGATGGCGTGGTGT
TTCGTATATTTTCCTCCTCATGGAGATAAATCAATGATCTCAAACACAAT
GACATGGCTCTTATCCAGCTCTTATCCAGCTCTGAAAGATTTTGGACGCA
CAGCTCTTCGATACTCCAAACCGGTCACCAAGGTCCTCAAAAAGTAATCC
CAATCTCAGCTTCATTAGTG

Coding sequence (CDS) from alignment at sc0005245:3426..4045

>TCONS_00044246 ID=TCONS_00044246|Name=TCONS_00044246|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0005245:3426..4045 (Clytia hemisphaerica)
GAAAGTTTTCACCCTACGAATGACCTGTTCAACCAAAATCCGAACTTTAG
CAATGTGAGCTGTCTTTTTAAGTTGCGCTTCAGTCATTTGGGAAGTACCG
CGTCTTCCAGGTGGAATAATTAGATGTATGCTTTTTTGAGCACACTCTTG
TTCAATATTAAAACCTTTATCTGTCATAAGACTACAGTATGGGGGTAGAG
TGTCCAGGAACTCAGTCTCATTTACAATAGCCTTGTCTGATATTCTTCCG
GTGTAGGGCTCTGAAACATAACTGATCAAAGAGTTGGGTAAGACACTAAT
TAAGATTTTTGCAGTGTTGTGATGTTTATATTCACTCCACTCAGTCGCAC
TTTGTAGTTCTAAACTTTTTGgagtttcaataaaaacttcGGTACAGTCC
ATGATACCAATTAATCTATGAAACCCTCTGAACCGTGATGGCGTGGTGTT
TCGTATATTTTCCTCCTCATGGAGATAAATCAATGATCTCAAACACAATG
ACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027887XLOC_027887Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044246-proteinTCONS_00044246-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044246-exon-sc0005245-1491911889:3426..4045TCONS_00044246-exon-sc0005245-1491911889:3426..4045Clytia hemisphaericaexon
TCONS_00044246-exon-sc0005245-1510915933:3426..4045TCONS_00044246-exon-sc0005245-1510915933:3426..4045Clytia hemisphaericaexon
TCONS_00044246-exon-sc0005245-1575043694:3426..4045TCONS_00044246-exon-sc0005245-1575043694:3426..4045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005245supercontigsc0005245:3426..4045 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0536894	0.266701	0.913255	0.460142	2.25018	1.25165	0	0.442382	0	0.398622	0	0	0.229401	0.297565	0.457154	0.245161	0.42355	0	0.561852	0.971718	0.147546	0.516482	0.998892	0	0.387073	0	0.141066	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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