TCONS_00044242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044242
Unique NameTCONS_00044242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044242 ID=TCONS_00044242|Name=TCONS_00044242|organism=Clytia hemisphaerica|type=transcript|length=512bp
TACGACGAGAAGTTTTATATTGGACTTGCCGAACCTGCTTTCAAAAAACG
TTTCGCAAACCACAAGTCTTCTTTCGCAAACCACCGCTACGAAAATGAGA
CGGAATTGTCAAAAGAAGTTTGGAGGTTAAAACGAAAAAGCCTATCGCCA
AAAATCGCATGGAAAACCATCCGGCAGTGCCCACCGTTCAACCGTTCCTC
GCTGAAATGCTCACTTTGTCTCGCGGAGAAACTTGAAATCGCTACATTTC
CGAGCCCTGAAAAGCTTTTGAATTCCAGGAATGAACTGATTTCAAAATGC
CGTCACGTGAACAAGTTCACTTTAAAAGTTCATGACACCAAGGactaaaa
tgacgtcaatttttgacgaagaccctgcaatgttatttttttgtaaaAGC
AACGGAACtctagtttaaaaaaaatttattttcaactgaggattgtttgt
aaaaacatgaaactgccagtattgaaaaaataattttcattactttaacT
ACGATATAACGC
Run BLAST on NCBI

protein sequence of TCONS_00044242-protein

>TCONS_00044242-protein ID=TCONS_00044242-protein|Name=TCONS_00044242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
YDEKFYIGLAEPAFKKRFANHKSSFANHRYENETELSKEVWRLKRKSLSP
KIAWKTIRQCPPFNRSSLKCSLCLAEKLEIATFPSPEKLLNSRNELISKC
RHVNKFTLKVHDTKD
Run BLAST on NCBI

transcript from alignment at sc0005230:655..1677-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044242 ID=TCONS_00044242|Name=TCONS_00044242|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at sc0005230:655..1677- (Clytia hemisphaerica)
TACGACGAGAAGTTTTATATTGGACTTGCCGAACCTGCTTTCAAAAAACG
TTTCGCAAACCACAAGTCTTCTTTCGCAAACCACCGCTACGAAAATGAGA
CGGAATTGTCAAAAGAAGTTTGGAGGTTAAAACGAAAAAGCCTATCGCCA
AAAATCGCATGGAAAACCATCCGGCAGTGCCCACCGTTCAACCGTTCCTC
GCTGAAATGCTCACTTTGTCTCGCGGAGAAACTTGAAATCGCTACATTTC
CGAGCCCTGAAAAGCTTTTGAATTCCAGGAATGAACTGATTTCAAAATGC
CGTCACGTGAACAAGTTCACTTTAAAAGTTCATGACACCAAGGACTAAAA
TGACGTCAATTTTTGACGAAGACCCTGCAATGTTATTTTTTTGTAAAGCT
GGGAGCAAACCGTCAAACATGGTTCTTCAAACATCGTGACGTTTCATGTT
TGAAATCGATGTTTGACGGTTTGCGGAGTCAAAAATCGTTTCTTTTCAAC
AAAAAGATCAAAAAATATGTTTGAAACAATGTTTGAACAAGCTCATATTT
TTTTCAAACATTCAACTCGGGGTTTCCCTAGAAGGAAGTCATTGCATTGC
TAATCGAACATTGAAAGACTTTGAAAGCGTGATTTGAAAAGTAAACAAAA
GAAAGAAGCCGTTGTAATTCAACAAAATGAATGTTTGAAACAATGTTGGA
AAATGCCGCGCAAACCATTCAACAAGAAAGTTCAAATGTTTGAAGAACCA
TGTTTGATGGTTTGCTCCCAGCTTTAGATTTTNNNNNNNNNNNNNNNNTG
CAACAAAATAAATGTTTGAGACAATGTTGGAAAATGCCGCGCAAACCATT
CAACAAGAAAGTTCAAATGTTTGAAGAACCATGTTTGATGGTTTGCTCCA
AGCTTAAGAGCAACGGAACTCTAGTTTAAAAAAAATTTATTTTCAACTGA
GGATTGTTTGTAAAAACATGAAACTGCCAGTATTGAAAAAATAATTTTCA
TTACTTTAACTACGATATAACGC

Coding sequence (CDS) from alignment at sc0005230:655..1677-

>TCONS_00044242 ID=TCONS_00044242|Name=TCONS_00044242|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0005230:655..1677- (Clytia hemisphaerica)
TACGACGAGAAGTTTTATATTGGACTTGCCGAACCTGCTTTCAAAAAACG
TTTCGCAAACCACAAGTCTTCTTTCGCAAACCACCGCTACGAAAATGAGA
CGGAATTGTCAAAAGAAGTTTGGAGGTTAAAACGAAAAAGCCTATCGCCA
AAAATCGCATGGAAAACCATCCGGCAGTGCCCACCGTTCAACCGTTCCTC
GCTGAAATGCTCACTTTGTCTCGCGGAGAAACTTGAAATCGCTACATTTC
CGAGCCCTGAAAAGCTTTTGAATTCCAGGAATGAACTGATTTCAAAATGC
CGTCACGTGAACAAGTTCACTTTAAAAGTTCATGACACCAAGGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027883XLOC_027883Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044242-proteinTCONS_00044242-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044242-exon-sc0005230-1575043694:1281..1677TCONS_00044242-exon-sc0005230-1575043694:1281..1677Clytia hemisphaericaexon
TCONS_00044242-exon-sc0005230-1575043694:655..769TCONS_00044242-exon-sc0005230-1575043694:655..769Clytia hemisphaericaexon
TCONS_00044242-exon-sc0005230-1510915933:1281..1677TCONS_00044242-exon-sc0005230-1510915933:1281..1677Clytia hemisphaericaexon
TCONS_00044242-exon-sc0005230-1510915933:655..769TCONS_00044242-exon-sc0005230-1510915933:655..769Clytia hemisphaericaexon
TCONS_00044242-exon-sc0005230-1491911889:1281..1677TCONS_00044242-exon-sc0005230-1491911889:1281..1677Clytia hemisphaericaexon
TCONS_00044242-exon-sc0005230-1491911889:655..769TCONS_00044242-exon-sc0005230-1491911889:655..769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005230supercontigsc0005230:655..1677 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.442859	0.699085	0.751044	0.847078	0.994539	0.726397	0.490229	1.21141	0.926662	0.884833	0.355878	0.52361	0.48394	0.226539	0.284636	0.295924	0.927492	0.227842	0.414734	0.571202	1.54475	2.82867	0.673192	0.961329	0.377137	0.441568	0.895372	0.751565	1.74073	1.89905
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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