|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044238 ID=TCONS_00044238|Name=TCONS_00044238|organism=Clytia hemisphaerica|type=transcript|length=418bp
NNGAACGAACAAAATATGTCGGCTATTTCTTAATGTTACTTTATGGTTTG
GAATCAAATGCTGTTTTAGTATCACTTATGTATTACCTTGCTGAATCGTT
TGGAATGGATGATCAAACTGCCCGAACTTACTTCAGTATTTCGGAAACGT
TTAATGCAGTCGGACAGTTTTTTGGTGGATTACTTCTCGGACGGTATACG
GACGTCACGAGAAATTTACGATATGCTTTTCTGGTTAATTTATTTGCAAT
CTGTGTAGGGAATTTAATGTATTCTCTTAATTTTAACATATGGTTATTGC
TTATTGGTCGATTGTTATGTGGATTGAATGAAGCATTACAAACATCACTA
GGAGGTGAATTCAGAAGATGCTATAAAGACAAAGAATTGATTGACGTGTT
TGGATGGTACGAAATTTG Run BLAST on NCBI protein sequence of TCONS_00044238-protein >TCONS_00044238-protein ID=TCONS_00044238-protein|Name=TCONS_00044238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
ERTKYVGYFLMLLYGLESNAVLVSLMYYLAESFGMDDQTARTYFSISETF
NAVGQFFGGLLLGRYTDVTRNLRYAFLVNLFAICVGNLMYSLNFNIWLLL
IGRLLCGLNEALQTSLGGEFRRCYKDKELIDVFGWYEI Run BLAST on NCBI transcript from alignment at sc0005225:3428..4748+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044238 ID=TCONS_00044238|Name=TCONS_00044238|organism=Clytia hemisphaerica|type=transcript|length=1321bp|location=Sequence derived from alignment at sc0005225:3428..4748+ (Clytia hemisphaerica)
NNGAACGAACAAAATATGTCGGCTATTTCTTAATGTTACTTTATGGTTTG
GAATCAAATGCTGTTTTAGTATCACTTATGTATTACCTTGCTGAATCGTT
TGGAATGGATGATCAAACTGCCCGAACTTACTTCAGTATTTCGGAAACGT
TTAATGCAGTCGGACAGTTTTTTGGTGGATTACTTCTCGGACGGTATACG
GACGTCACGAGAAATTTACGATATGCTTTTCTGGTTAATTTATTTGCAAT
CTGTGTAGGGAATTTAATGTATTCTCTTAATTTTAACATATGGTTATTGC
TTATTGGTCGATTGTTATGTGGATTGAATGAAGCATTACAAACATCACTA
GGAGGTGTGTTATTTGCGTATTTCAAACACATTTTTGTAAAGTAAGAGGG
GAAATCCTTAGGGCCCATGACAGCTTTTAGGTGACGCATCTAAACCGGAT
CCATTTCAaagaagggcaaatttttttttgtcataattcTACActctatt
aggagcataatctaaaaaatttgccctgatctaagtaccctacgaaaacc
atttttaaggcctcttctgaatctcggacgctggtctaatAGGACTTTTG
TGGATATAGTTTTCTCTACCTATCTCGAGAAAATTAACGTCAAAGTTGCG
GTTTGACGTCATTCCCTGTCGATTTGATAACAATAATATTAAAACACAAA
GGTTTCAGACAAATTATTCATTTTGTGAAATATGAAGCAGTTCTAAAATT
TATCAACATGGCTGTTATTCCCAGAGCTCTGAGGCCATTAATTTTGAcgg
aaatgacaaaaaaaaatccgtagGAACATAAGAGCATGAAACTTGGCcat
aaaccaatttaaattaattttagtcTCAGAGTATCTCAAGTATGCACGAA
GGTACGTGTATTTATTTAAGAGAAACAAACGTGTATAAGCCTGGAATAGA
ATTTGtctattttcaaaggaaaaggGGGGAGGGATGTGTTAGATAAGGAG
AAACTTGGTCTAATGAGTTggattctttcaaatttttctttttcgtacAC
TGTTGCCCCGACTGTTGCCAATATAAAATTTACCTCTATCTTAAAATTAT
CTGGAGTGAAGACTTAAAAAGGCTGACACTAtaaatgtgtgaaaaaaaac
tattcAAATTAAAGTATATCTGATTGACATAAAATAGTCACTTTTATTGA
CGATTGACTAAGTCAATCAGTGATATTTATGAATAACTATCTTTCTTCTA
TTTAAAGGTGAATTCAGAAGATGCTATAAAGACAAAGAATTGATTGACGT
GTTTGGATGGTACGAAATTTG Coding sequence (CDS) from alignment at sc0005225:3428..4748+ >TCONS_00044238 ID=TCONS_00044238|Name=TCONS_00044238|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0005225:3428..4748+ (Clytia hemisphaerica)
GAACGAACAAAATATGTCGGCTATTTCTTAATGTTACTTTATGGTTTGGA
ATCAAATGCTGTTTTAGTATCACTTATGTATTACCTTGCTGAATCGTTTG
GAATGGATGATCAAACTGCCCGAACTTACTTCAGTATTTCGGAAACGTTT
AATGCAGTCGGACAGTTTTTTGGTGGATTACTTCTCGGACGGTATACGGA
CGTCACGAGAAATTTACGATATGCTTTTCTGGTTAATTTATTTGCAATCT
GTGTAGGGAATTTAATGTATTCTCTTAATTTTAACATATGGTTATTGCTT
ATTGGTCGATTGTTATGTGGATTGAATGAAGCATTACAAACATCACTAGG
AGGTGAATTCAGAAGATGCTATAAAGACAAAGAATTGATTGACGTGTTTG
GATGGTACGAAATTGAACGAACAAAATATGTCGGCTATTTCTTAATGTTA
CTTTATGGTTTGGAATCAAATGCTGTTTTAGTATCACTTATGTATTACCT
TGCTGAATCGTTTGGAATGGATGATCAAACTGCCCGAACTTACTTCAGTA
TTTCGGAAACGTTTAATGCAGTCGGACAGTTTTTTGGTGGATTACTTCTC
GGACGGTATACGGACGTCACGAGAAATTTACGATATGCTTTTCTGGTTAA
TTTATTTGCAATCTGTGTAGGGAATTTAATGTATTCTCTTAATTTTAACA
TATGGTTATTGCTTATTGGTCGATTGTTATGTGGATTGAATGAAGCATTA
CAAACATCACTAGGAGGTGAATTCAGAAGATGCTATAAAGACAAAGAATT
GATTGACGTGTTTGGATGGTACGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044238-exon-sc0005225-1491911889:3428..3781 | TCONS_00044238-exon-sc0005225-1491911889:3428..3781 | Clytia hemisphaerica | exon |
| TCONS_00044238-exon-sc0005225-1510915933:3428..3781 | TCONS_00044238-exon-sc0005225-1510915933:3428..3781 | Clytia hemisphaerica | exon |
| TCONS_00044238-exon-sc0005225-1575043694:3428..3781 | TCONS_00044238-exon-sc0005225-1575043694:3428..3781 | Clytia hemisphaerica | exon |
| TCONS_00044238-exon-sc0005225-1491911889:4685..4748 | TCONS_00044238-exon-sc0005225-1491911889:4685..4748 | Clytia hemisphaerica | exon |
| TCONS_00044238-exon-sc0005225-1510915933:4685..4748 | TCONS_00044238-exon-sc0005225-1510915933:4685..4748 | Clytia hemisphaerica | exon |
| TCONS_00044238-exon-sc0005225-1575043694:4685..4748 | TCONS_00044238-exon-sc0005225-1575043694:4685..4748 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005225 | supercontig | sc0005225:3428..4748 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
