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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044237 ID=TCONS_00044237|Name=TCONS_00044237|organism=Clytia hemisphaerica|type=transcript|length=882bp
AGGTCCCATTCGGCCCCATGGTGCCAAGGGAAAGTGCTACAATCGCCGCC
ACAAACGGAAGTCCAAAGGTCCACAATAACAATTTGTAATCACATTTACC
AAAATCCATATTGGTtcgaaaataaatcaaaacaaatgcatTAATGGAGA
CAACGTTAACCATAAGGTTTTGGGCTGTTATAAATTCAGCTAGCATAAAT
CCATAAAATTCGCAAAGGCTTTTGGGATACGGGTGATCATGTGTTATGAA
GATATGTAAATGATCCAAGGAATGGCATATATTAAACAGACCATCACATA
TTGCCAGATAAACAACAAAACGTTCGCTTTTATTCCACATAAAAAACGTT
CGAAAACTTTTCGTCTTAAATGAAAATACCAATACACAAATAGCGGCAAT
CAAACTTAGAAATATACACGTTAAAGCTGGGATGTGGATAGCAGCAAATT
GTCCTTGCTCGATCCCGTAGACGGGTAGATCCCAGCCGTCAATCAATACT
TTCTTAGTAGGTGTCATAGCCATCTGTGTACTGATGGATTGGTTATTTCC
TCTTGTATTTACGATTAGCATTTTCACCGCAAGATTgccaaaaccaaaac
caaacGTCAAATAAAATCCTTGTATCCtgtatcaaaacaaaacaggtGGA
TAGGTATTAGTCTCCGAAGGAGTAGGAACCGCCGAAGTATTTCACAAATT
AAACGTATAAGATCATTTTTTCCTGTGGTAACCTACCAGATCATGATATG
TACCTCGACACTCAAACGACACCGAAAATCTCGAATCGTAATAACACGGT
TGATATTGAAACCAAATCTCCCAGGACTGACGTCAAAGCGTGAAAACGAA
AACTACTATCATActacagttttgaaaaaaat Run BLAST on NCBI protein sequence of TCONS_00044237-protein >TCONS_00044237-protein ID=TCONS_00044237-protein|Name=TCONS_00044237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MLIVNTRGNNQSISTQMAMTPTKKVLIDGWDLPVYGIEQGQFAAIHIPAL
TCIFLSLIAAICVLVFSFKTKSFRTFFMWNKSERFVVYLAICDGLFNICH
SLDHLHIFITHDHPYPKSLCEFYGFMLAEFITAQNLMVNVVSINAFVLIY
FRTNMDFGKCDYKLLLWTFGLPFVAAIVALSLGTMGPNGT Run BLAST on NCBI transcript from alignment at sc0005222:2816..3697 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044237 ID=TCONS_00044237|Name=TCONS_00044237|organism=Clytia hemisphaerica|type=transcript|length=882bp|location=Sequence derived from alignment at sc0005222:2816..3697 (Clytia hemisphaerica)
atttttttcaaaactgtagTATGATAGTAGTTTTCGTTTTCACGCTTTGA
CGTCAGTCCTGGGAGATTTGGTTTCAATATCAACCGTGTTATTACGATTC
GAGATTTTCGGTGTCGTTTGAGTGTCGAGGTACATATCATGATCTGGTAG
GTTACCACAGGAAAAAATGATCTTATACGTTTAATTTGTGAAATACTTCG
GCGGTTCCTACTCCTTCGGAGACTAATACCTATCCacctgttttgttttg
atacaGGATACAAGGATTTTATTTGACgtttggttttggttttggcAATC
TTGCGGTGAAAATGCTAATCGTAAATACAAGAGGAAATAACCAATCCATC
AGTACACAGATGGCTATGACACCTACTAAGAAAGTATTGATTGACGGCTG
GGATCTACCCGTCTACGGGATCGAGCAAGGACAATTTGCTGCTATCCACA
TCCCAGCTTTAACGTGTATATTTCTAAGTTTGATTGCCGCTATTTGTGTA
TTGGTATTTTCATTTAAGACGAAAAGTTTTCGAACGTTTTTTATGTGGAA
TAAAAGCGAACGTTTTGTTGTTTATCTGGCAATATGTGATGGTCTGTTTA
ATATATGCCATTCCTTGGATCATTTACATATCTTCATAACACATGATCAC
CCGTATCCCAAAAGCCTTTGCGAATTTTATGGATTTATGCTAGCTGAATT
TATAACAGCCCAAAACCTTATGGTTAACGTTGTCTCCATTAatgcatttg
ttttgatttattttcgaACCAATATGGATTTTGGTAAATGTGATTACAAA
TTGTTATTGTGGACCTTTGGACTTCCGTTTGTGGCGGCGATTGTAGCACT
TTCCCTTGGCACCATGGGGCCGAATGGGACCT Coding sequence (CDS) from alignment at sc0005222:2816..3697 >TCONS_00044237 ID=TCONS_00044237|Name=TCONS_00044237|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at sc0005222:2816..3697 (Clytia hemisphaerica)
ATGCTAATCGTAAATACAAGAGGAAATAACCAATCCATCAGTACACAGAT
GGCTATGACACCTACTAAGAAAGTATTGATTGACGGCTGGGATCTACCCG
TCTACGGGATCGAGCAAGGACAATTTGCTGCTATCCACATCCCAGCTTTA
ACGTGTATATTTCTAAGTTTGATTGCCGCTATTTGTGTATTGGTATTTTC
ATTTAAGACGAAAAGTTTTCGAACGTTTTTTATGTGGAATAAAAGCGAAC
GTTTTGTTGTTTATCTGGCAATATGTGATGGTCTGTTTAATATATGCCAT
TCCTTGGATCATTTACATATCTTCATAACACATGATCACCCGTATCCCAA
AAGCCTTTGCGAATTTTATGGATTTATGCTAGCTGAATTTATAACAGCCC
AAAACCTTATGGTTAACGTTGTCTCCATTAatgcatttgttttgatttat
tttcgaACCAATATGGATTTTGGTAAATGTGATTACAAATTGTTATTGTG
GACCTTTGGACTTCCGTTTGTGGCGGCGATTGTAGCACTTTCCCTTGGCA
CCATGGGGCCGAATGGGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044237-exon-sc0005222-1491911889:2816..3697 | TCONS_00044237-exon-sc0005222-1491911889:2816..3697 | Clytia hemisphaerica | exon |
| TCONS_00044237-exon-sc0005222-1510915933:2816..3697 | TCONS_00044237-exon-sc0005222-1510915933:2816..3697 | Clytia hemisphaerica | exon |
| TCONS_00044237-exon-sc0005222-1575043694:2816..3697 | TCONS_00044237-exon-sc0005222-1575043694:2816..3697 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005222 | supercontig | sc0005222:2816..3697 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023041 | Glucose_rcpt_Git3_N |
Blast
The following BLAST results are available for this feature:
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