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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044236 ID=TCONS_00044236|Name=TCONS_00044236|organism=Clytia hemisphaerica|type=transcript|length=2037bp
GTATATCATAGacatattttagaaaaattaaacatcCCTGGAAAATGGGA
CGTGAGAAAGTTGTATTGAAGTCACAAGAGGAAATCACAACAAGATGCAG
GGTTGTGCCATCAGGATTTGCTGGTATTGGACCAAATGGATCCTTCTTTG
AAGCTCCAGATTGGGTTGATGTGAAAAAGACTCCTGGTCATACATCACAG
GAACCAGCTGTGTCACCTCCCGGATGGTGGATCCATCATTTATACGGAAA
AACTCTTCTGTTCAGTCCAAACTTGGTCTGGTACGCTATCTCCTTATTCG
TTTACTTCTATTTCCCATATAATTTCGAGGCAGCCAAGGATCTCAAGAAC
TTTGGATGGGTTTATGAGCGATTGGTCATTAACACAGTTCTAGTATTTGG
TTATGTTGGGTTCTGGCATTGCGTTTTGTATGTTTTGGGTTGGTCTGAAC
GTCCGTTTCATCCAAACAGGAAATATAGGTTTGGCAAAGTCTTGCATAAC
ATGTGGTATAACTTTTTGGGCACTGTCCAATATACAGTCTGGGAAGCCAT
TATGATGTATTGTTACGCAACCAAACGTCTTCCGTATATAACAGATCGCG
ATTCTTTCTCCACAACTAAAGGGATGATCATGTTCTTTATCGTCTCTGTT
GGTGTTCCGCTTTACCGTGAAACACATTTCTATTTCGCGCACCGGTTCAT
TCATATCAAAGCCTTATACAAATACGTCCATGCGTTGCATCACCGTAACA
CCGATATTGAGCCATTCGCTGGGCTATCAATGCACCCTGTCGAGCATTTA
TACTATTACAGTTCTATCGGTCCTTCCCTGGTGTTACTTGCATCTCCCTT
TGGCTTCTTATGGAATGGTATTCATCTTATAATCTCACCTGCAGCTTCAC
ATAGCGGCTGGGAGGACCATTTCCAGTCTGACCAATACCATTACCTACAC
CATCGATTCTTTGAATGTAATTACGGTACATCTAACCTTCCTTTAGACCG
AATGTTCGGTACATTCCGAGACAAGTTAAAAGAATCTGGTACAACGTATA
AGGGTGCAGCTGAAGAAAAAGTCGATCAAAAAGCAGTCGAGATTCATGAT
AAGAAAGCAACGCTGAATGGTCTACCAGAGCCTGGATTCGTCGTCTACCT
AGCCTTGAATTGCTTCATATGGCTATTATTATGGTACGCAGTCCAACATC
AATATGGTATTGAAAAATGGAATCCACATTGTTTAGCCTTCCTAACCAGT
ACTGGTCCAATTATCATAGCTCAATTGATGACGAATCTAACTGAGCGTGG
CAATCGATCCATTTTTTATCCATTCCATAAAGATGGATGGAAAGCGATGA
GTATGCACTTGTTCGTTTCGTCTTTGGTTTGTATTGCTCCTGTTTATATC
ATGGTTCATATGTTATTAAGTGAGCCTGGAAACTCATTCCTTTACTGGCT
TCTTGGTTAAGATATATAGAAAACTTTTTTGAACTATCTCTTGGTGATTA
CGGACATATCTATGATGTTGATACGATTTTACATAGATTGAAAACCTGCT
CAGGACAATAATTAATAGCATCATTAAAAGCACCTGAACCACGATTACTC
TTCTTATACAACCCAGGCAAATTTCATCTTTTTAGCATGATTTTCTTTCG
GCTGTAGAAACTTTTATTGAGGACCTTATGGTAAATCACAATCCTGACAG
ATCTGGAAAATCTTAAAAAATTCTTTCTATCGCGCCTAAACTTGACCTAT
TTTGCTTTTGCAAAAGCTGATCTCAGCTGATTTCGATTTCTTCTAAAAAA
TGTAAAAATCATCTTTTTTTCAATATTCGCGGTAAAGGAAGAAAGATGCT
GGTAGAATAGGCCACAATAGAAAGCAGGGGCAGATCGTGTTTTATACATT
TTACTGGATGAGTTCCTTTTTATACATTTATTTTTGAAATATGACCAGCT
TATTTACCTGTAATCCAACCTTTTTTTAAAGAATATCATAATATCCAATC
GATACACTTCCATATTGAATCATGGTCTCAAGTTACA Run BLAST on NCBI protein sequence of TCONS_00044236-protein >TCONS_00044236-protein ID=TCONS_00044236-protein|Name=TCONS_00044236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MGREKVVLKSQEEITTRCRVVPSGFAGIGPNGSFFEAPDWVDVKKTPGHT
SQEPAVSPPGWWIHHLYGKTLLFSPNLVWYAISLFVYFYFPYNFEAAKDL
KNFGWVYERLVINTVLVFGYVGFWHCVLYVLGWSERPFHPNRKYRFGKVL
HNMWYNFLGTVQYTVWEAIMMYCYATKRLPYITDRDSFSTTKGMIMFFIV
SVGVPLYRETHFYFAHRFIHIKALYKYVHALHHRNTDIEPFAGLSMHPVE
HLYYYSSIGPSLVLLASPFGFLWNGIHLIISPAASHSGWEDHFQSDQYHY
LHHRFFECNYGTSNLPLDRMFGTFRDKLKESGTTYKGAAEEKVDQKAVEI
HDKKATLNGLPEPGFVVYLALNCFIWLLLWYAVQHQYGIEKWNPHCLAFL
TSTGPIIIAQLMTNLTERGNRSIFYPFHKDGWKAMSMHLFVSSLVCIAPV
YIMVHMLLSEPGNSFLYWLLG Run BLAST on NCBI transcript from alignment at sc0005221:1410..3792+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044236 ID=TCONS_00044236|Name=TCONS_00044236|organism=Clytia hemisphaerica|type=transcript|length=2383bp|location=Sequence derived from alignment at sc0005221:1410..3792+ (Clytia hemisphaerica)
GTATATCATAGacatattttagaaaaattaaacatcCCTGGAAAATGGGA
CGTGAGAAAGTTGTATTGAAGTCACAAGAGGAAATCACAACAAGATGCAG
GGTTGTGCCATCAGGATTTGCTGGTATTGGACCAAATGGATCCTTCTTTG
AAGCTCCAGATTGGGTTGATGTGAAAAAGACTCCTGGTCATACATCACAG
GTGTGGTAATATTCATGTTATACATTAGGTTTTAAACTTTAGACATTAAC
CCCCCAGTCCCGTGTGTGTTATGAATATGAATATCAATATTTTATGAGGC
ACATACAATTAAGAACCGTTGGATCTCTTGTAAAGAAACTTTTAGAATCC
TCTGGATATCCCTTTAAGAAATTTTGGATATCTGCTCCGTTGTAGAGATA
AGTTAACAATCTCGATATGGTCCACTAGAATTTCGAGTACATTGGACAAA
AGCTGTACCTTTTTTATGGTTCGTCAACCTAAGATTGACCCTCAGAAAAA
CTGGACAACGACCTTAAAAACAATTTTGTTCTTAATTCTTTTTAAGGAAC
CAGCTGTGTCACCTCCCGGATGGTGGATCCATCATTTATACGGAAAAACT
CTTCTGTTCAGTCCAAACTTGGTCTGGTACGCTATCTCCTTATTCGTTTA
CTTCTATTTCCCATATAATTTCGAGGCAGCCAAGGATCTCAAGAACTTTG
GATGGGTTTATGAGCGATTGGTCATTAACACAGTTCTAGTATTTGGTTAT
GTTGGGTTCTGGCATTGCGTTTTGTATGTTTTGGGTTGGTCTGAACGTCC
GTTTCATCCAAACAGGAAATATAGGTTTGGCAAAGTCTTGCATAACATGT
GGTATAACTTTTTGGGCACTGTCCAATATACAGTCTGGGAAGCCATTATG
ATGTATTGTTACGCAACCAAACGTCTTCCGTATATAACAGATCGCGATTC
TTTCTCCACAACTAAAGGGATGATCATGTTCTTTATCGTCTCTGTTGGTG
TTCCGCTTTACCGTGAAACACATTTCTATTTCGCGCACCGGTTCATTCAT
ATCAAAGCCTTATACAAATACGTCCATGCGTTGCATCACCGTAACACCGA
TATTGAGCCATTCGCTGGGCTATCAATGCACCCTGTCGAGCATTTATACT
ATTACAGTTCTATCGGTCCTTCCCTGGTGTTACTTGCATCTCCCTTTGGC
TTCTTATGGAATGGTATTCATCTTATAATCTCACCTGCAGCTTCACATAG
CGGCTGGGAGGACCATTTCCAGTCTGACCAATACCATTACCTACACCATC
GATTCTTTGAATGTAATTACGGTACATCTAACCTTCCTTTAGACCGAATG
TTCGGTACATTCCGAGACAAGTTAAAAGAATCTGGTACAACGTATAAGGG
TGCAGCTGAAGAAAAAGTCGATCAAAAAGCAGTCGAGATTCATGATAAGA
AAGCAACGCTGAATGGTCTACCAGAGCCTGGATTCGTCGTCTACCTAGCC
TTGAATTGCTTCATATGGCTATTATTATGGTACGCAGTCCAACATCAATA
TGGTATTGAAAAATGGAATCCACATTGTTTAGCCTTCCTAACCAGTACTG
GTCCAATTATCATAGCTCAATTGATGACGAATCTAACTGAGCGTGGCAAT
CGATCCATTTTTTATCCATTCCATAAAGATGGATGGAAAGCGATGAGTAT
GCACTTGTTCGTTTCGTCTTTGGTTTGTATTGCTCCTGTTTATATCATGG
TTCATATGTTATTAAGTGAGCCTGGAAACTCATTCCTTTACTGGCTTCTT
GGTTAAGATATATAGAAAACTTTTTTGAACTATCTCTTGGTGATTACGGA
CATATCTATGATGTTGATACGATTTTACATAGATTGAAAACCTGCTCAGG
ACAATAATTAATAGCATCATTAAAAGCACCTGAACCACGATTACTCTTCT
TATACAACCCAGGCAAATTTCATCTTTTTAGCATGATTTTCTTTCGGCTG
TAGAAACTTTTATTGAGGACCTTATGGTAAATCACAATCCTGACAGATCT
GGAAAATCTTAAAAAATTCTTTCTATCGCGCCTAAACTTGACCTATTTTG
CTTTTGCAAAAGCTGATCTCAGCTGATTTCGATTTCTTCTAAAAAATGTA
AAAATCATCTTTTTTTCAATATTCGCGGTAAAGGAAGAAAGATGCTGGTA
GAATAGGCCACAATAGAAAGCAGGGGCAGATCGTGTTTTATACATTTTAC
TGGATGAGTTCCTTTTTATACATTTATTTTTGAAATATGACCAGCTTATT
TACCTGTAATCCAACCTTTTTTTAAAGAATATCATAATATCCAATCGATA
CACTTCCATATTGAATCATGGTCTCAAGTTACA Coding sequence (CDS) from alignment at sc0005221:1410..3792+ >TCONS_00044236 ID=TCONS_00044236|Name=TCONS_00044236|organism=Clytia hemisphaerica|type=CDS|length=2832bp|location=Sequence derived from alignment at sc0005221:1410..3792+ (Clytia hemisphaerica)
ATGGGACGTGAGAAAGTTGTATTGAAGTCACAAGAGGAAATCACAACAAG
ATGCAGGGTTGTGCCATCAGGATTTGCTGGTATTGGACCAAATGGATCCT
TCTTTGAAGCTCCAGATTGGGTTGATGTGAAAAAGACTCCTGGTCATACA
TCACAGGAACCAGCTGTGTCACCTCCCGGATGGTGGATCCATCATTTATA
CGGAAAAACTCTTCTGTTCAGTCCAAACTTGGTCTGGTACGCTATCTCCT
TATTCGTTTACTTCTATTTCCCATATAATTTCGAGGCAGCCAAGGATCTC
AAGAACTTTGGATGGGTTTATGAGCGATTGGTCATTAACACAGTTCTAGT
ATTTGGTTATGTTGGGTTCTGGCATTGCGTTTTGTATGTTTTGGGTTGGT
CTGAACGTCCGTTTCATCCAAACAGGAAATATAGGTTTGGCAAAGTCTTG
CATAACATGTGGTATAACTTTTTGGGCACTGTCCAATATACAGTCTGGGA
AGCCATTATGATGTATTGTTACGCAACCAAACGTCTTCCGTATATAACAG
ATCGCGATTCTTTCTCCACAACTAAAGGGATGATCATGTTCTTTATCGTC
TCTGTTGGTGTTCCGCTTTACCGTGAAACACATTTCTATTTCGCGCACCG
GTTCATTCATATCAAAGCCTTATACAAATACGTCCATGCGTTGCATCACC
GTAACACCGATATTGAGCCATTCGCTGGGCTATCAATGCACCCTGTCGAG
CATTTATACTATTACAGTTCTATCGGTCCTTCCCTGGTGTTACTTGCATC
TCCCTTTGGCTTCTTATGGAATGGTATTCATCTTATAATCTCACCTGCAG
CTTCACATAGCGGCTGGGAGGACCATTTCCAGTCTGACCAATACCATTAC
CTACACCATCGATTCTTTGAATGTAATTACGGTACATCTAACCTTCCTTT
AGACCGAATGTTCGGTACATTCCGAGACAAGTTAAAAGAATCTGGTACAA
CGTATAAGGGTGCAGCTGAAGAAAAAGTCGATCAAAAAGCAGTCGAGATT
CATGATAAGAAAGCAACGCTGAATGGTCTACCAGAGCCTGGATTCGTCGT
CTACCTAGCCTTGAATTGCTTCATATGGCTATTATTATGGTACGCAGTCC
AACATCAATATGGTATTGAAAAATGGAATCCACATTGTTTAGCCTTCCTA
ACCAGTACTGGTCCAATTATCATAGCTCAATTGATGACGAATCTAACTGA
GCGTGGCAATCGATCCATTTTTTATCCATTCCATAAAGATGGATGGAAAG
CGATGAGTATGCACTTGTTCGTTTCGTCTTTGGTTTGTATTGCTCCTGTT
TATATCATGGTTCATATGTTATTAAGTGAGCCTGGAAACTCATTCCTTTA
CTGGCTTCTTGGTTAAATGGGACGTGAGAAAGTTGTATTGAAGTCACAAG
AGGAAATCACAACAAGATGCAGGGTTGTGCCATCAGGATTTGCTGGTATT
GGACCAAATGGATCCTTCTTTGAAGCTCCAGATTGGGTTGATGTGAAAAA
GACTCCTGGTCATACATCACAGGAACCAGCTGTGTCACCTCCCGGATGGT
GGATCCATCATTTATACGGAAAAACTCTTCTGTTCAGTCCAAACTTGGTC
TGGTACGCTATCTCCTTATTCGTTTACTTCTATTTCCCATATAATTTCGA
GGCAGCCAAGGATCTCAAGAACTTTGGATGGGTTTATGAGCGATTGGTCA
TTAACACAGTTCTAGTATTTGGTTATGTTGGGTTCTGGCATTGCGTTTTG
TATGTTTTGGGTTGGTCTGAACGTCCGTTTCATCCAAACAGGAAATATAG
GTTTGGCAAAGTCTTGCATAACATGTGGTATAACTTTTTGGGCACTGTCC
AATATACAGTCTGGGAAGCCATTATGATGTATTGTTACGCAACCAAACGT
CTTCCGTATATAACAGATCGCGATTCTTTCTCCACAACTAAAGGGATGAT
CATGTTCTTTATCGTCTCTGTTGGTGTTCCGCTTTACCGTGAAACACATT
TCTATTTCGCGCACCGGTTCATTCATATCAAAGCCTTATACAAATACGTC
CATGCGTTGCATCACCGTAACACCGATATTGAGCCATTCGCTGGGCTATC
AATGCACCCTGTCGAGCATTTATACTATTACAGTTCTATCGGTCCTTCCC
TGGTGTTACTTGCATCTCCCTTTGGCTTCTTATGGAATGGTATTCATCTT
ATAATCTCACCTGCAGCTTCACATAGCGGCTGGGAGGACCATTTCCAGTC
TGACCAATACCATTACCTACACCATCGATTCTTTGAATGTAATTACGGTA
CATCTAACCTTCCTTTAGACCGAATGTTCGGTACATTCCGAGACAAGTTA
AAAGAATCTGGTACAACGTATAAGGGTGCAGCTGAAGAAAAAGTCGATCA
AAAAGCAGTCGAGATTCATGATAAGAAAGCAACGCTGAATGGTCTACCAG
AGCCTGGATTCGTCGTCTACCTAGCCTTGAATTGCTTCATATGGCTATTA
TTATGGTACGCAGTCCAACATCAATATGGTATTGAAAAATGGAATCCACA
TTGTTTAGCCTTCCTAACCAGTACTGGTCCAATTATCATAGCTCAATTGA
TGACGAATCTAACTGAGCGTGGCAATCGATCCATTTTTTATCCATTCCAT
AAAGATGGATGGAAAGCGATGAGTATGCACTTGTTCGTTTCGTCTTTGGT
TTGTATTGCTCCTGTTTATATCATGGTTCATATGTTATTAAGTGAGCCTG
GAAACTCATTCCTTTACTGGCTTCTTGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044236-exon-sc0005221-1491911889:1410..1609 | TCONS_00044236-exon-sc0005221-1491911889:1410..1609 | Clytia hemisphaerica | exon |
| TCONS_00044236-exon-sc0005221-1510915933:1410..1609 | TCONS_00044236-exon-sc0005221-1510915933:1410..1609 | Clytia hemisphaerica | exon |
| TCONS_00044236-exon-sc0005221-1575043694:1410..1609 | TCONS_00044236-exon-sc0005221-1575043694:1410..1609 | Clytia hemisphaerica | exon |
| TCONS_00044236-exon-sc0005221-1491911889:1956..3792 | TCONS_00044236-exon-sc0005221-1491911889:1956..3792 | Clytia hemisphaerica | exon |
| TCONS_00044236-exon-sc0005221-1510915933:1956..3792 | TCONS_00044236-exon-sc0005221-1510915933:1956..3792 | Clytia hemisphaerica | exon |
| TCONS_00044236-exon-sc0005221-1575043694:1956..3792 | TCONS_00044236-exon-sc0005221-1575043694:1956..3792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005221 | supercontig | sc0005221:1410..3792 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006694 | Fatty_acid_hydroxylase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008610 | lipid biosynthetic process |
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008610 |
lipid biosynthetic process |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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