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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044232 ID=TCONS_00044232|Name=TCONS_00044232|organism=Clytia hemisphaerica|type=transcript|length=2236bp
aagacATTCTTAGTAGCTGACGACAGATAGATAACGAGCTCCTATCATGA
GTTGAAACCCGCCTATAAAAACCGAACCCTTATAACTTGTTAACCAAACA
GATAAGAGTCGAAAAACAttcggtcggtcggttggtCTTTAAACACTAAA
TGCATTCATTCAGAACAAGTGTTTAAACCACCTTCAAACTTGGATTATTT
ACTTATAAAACTTTTGGATTTGTCACATTTTAAACACACTTGTACAACAC
TTGACGATGGGTCTGATGAGAAAATGGAGTTCAAAGAAACGCACTTCTAC
CGCTGCACAAGAACGTTTCCAAACAGCTCTGGCGAACGAGAACATCACAC
TGGTGCAGAATTTACTAATCAATAACCGCCACGAGATCGACTTGGAAGCG
TATAACAGGCAAGGTGTGACCGCTCTTCATTTATGCACTCTTGCCAATAA
TACGACCATGTTACGTGTTTTAATTAGCTTTGACGCCAATATTAATGCTA
CCGACAAGCATGGTTGGACTAGCCTGCACGCTGCAGCCGCTCTTGGTTAT
GAGGAGACCATTAAAGTACTTTTGAAGGCTGGAGTTGACCCGAAGGTGCG
ATCAACAACAGGTCAATCTGCCATTGATGTTGCGTTGACTGAAGAGATTA
GATACATGATGAGGAAATATGCAAAGAAATGCAACAAGGCGAAGCGAGAG
CAGAGTCTTTGTTCAGGCTCCTCCAACACTTCGAGGGGATCTAGTTGTGC
GAGCGTTAATCATTACTCCGACTGAGAGGTTGGTTTTATTGGCCTTACTC
GGTACACTTTTTGATGTCAGAATTCGGTAGAAAAGCTGTCGCCACTTTTG
TTTCTTCATTACTGGAAAAAACTGAGAAACATCATGGAGCTTGCAATCTT
CCTTAGATTTTGGTAGAAAAATTCCACATCATTATTGCTTAAAGACGTTT
GGAAGATCTATGATAATTATGACACTACCGCCAATGACATCTACGCATGC
ATTCCACAAGCGGTTCCAACCTTCATATTATTCTTATCTCTAAAACaagg
tgtcgaaattagaagagggctGTCGACATTAAACCAATTTCCAGTACTCT
ACCTAGCATATGTATTTACCTTTTATCGTTTTCGTGTTGATCTTATACAT
ATAAAAAGATGCCAGCCTATAGACAACTAGTATCAGTAGCGTGGTTGCAG
GAAGGGGCAGACCCCCAGCGGCCGATTTTTTCAGGGGGCGCCGAAATACA
AAGGGCGAAAAAAGACGTCTCTTattactaatttcggcgccctttgcttt
tttacaccttagaaTTGGCAGTTTTCCACCAAAAGGAGAGAAAATATCCA
GAAATTTTCGTACTCGCTTCCCTCGcgtaattttttaaaagatatttact
ttttgtNTTGTGCGAGCGTTAATCGTTACTCCGACTGAGAGGTTGATTTT
ATTGGCCTTACGTGGTACATTTTTTGATGTCAGAATTGGGTAGAAAAGCT
GTCGTCACTTTTGTTTCTTCATTACTGGACTGGTAACAGACGAGCAAAAC
ATCATGATGCTTCGTAATCTTCCTTAGATTTTGGTAGAAAAATTCCACAt
cgtttttgcttaaagacgTTTGAAGATCTTTGACCATTTTGACACTAACA
CCAAGGACATCTGCGCATGCACCTCCTTTGCGGAGTTACAGCCAAGAGCA
TCTTTTGATTGGCTGAAAGTACTGAAATCAGATGATATACGCGTAGTGAT
ACTCTACCTAGCATATGCATTTACCTTTTATCGTTTTCGTGTTGATACCA
gcttataccttatcggccctttttacgctggccctaatttaacgccggcc
cttattacgccacgagccgaaaaataacgccaataagggccggcgtaaaa
agggccgataaggtagacAACTAGTATGAGAGGGTTTAATAAAGACGTTG
AAATACGTTCATTTCAGTATCAATCAACCAAGCCATTTTAAGCGATAAAT
TCATACTCAAAGGAGTTCGTCTTGCGAACTGATATTTTTTAACATGTGAT
TTATGATGTTGATTAAATAAGTTTAGGATATATTGTTATAGAAtttcgaa
aatatattttagataggtatattatatttttttgtgtaaaaaaattGCAA
ACTAATGCAAAATGACATTTTATAAATATGATATTGTATACAGCAACATC
AAGCAAGAATACACGCTTTAATGGATTCGTCGCAAA Run BLAST on NCBI transcript from alignment at sc0005205:721..2956+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044232 ID=TCONS_00044232|Name=TCONS_00044232|organism=Clytia hemisphaerica|type=transcript|length=2236bp|location=Sequence derived from alignment at sc0005205:721..2956+ (Clytia hemisphaerica)
aagacATTCTTAGTAGCTGACGACAGATAGATAACGAGCTCCTATCATGA
GTTGAAACCCGCCTATAAAAACCGAACCCTTATAACTTGTTAACCAAACA
GATAAGAGTCGAAAAACAttcggtcggtcggttggtCTTTAAACACTAAA
TGCATTCATTCAGAACAAGTGTTTAAACCACCTTCAAACTTGGATTATTT
ACTTATAAAACTTTTGGATTTGTCACATTTTAAACACACTTGTACAACAC
TTGACGATGGGTCTGATGAGAAAATGGAGTTCAAAGAAACGCACTTCTAC
CGCTGCACAAGAACGTTTCCAAACAGCTCTGGCGAACGAGAACATCACAC
TGGTGCAGAATTTACTAATCAATAACCGCCACGAGATCGACTTGGAAGCG
TATAACAGGCAAGGTGTGACCGCTCTTCATTTATGCACTCTTGCCAATAA
TACGACCATGTTACGTGTTTTAATTAGCTTTGACGCCAATATTAATGCTA
CCGACAAGCATGGTTGGACTAGCCTGCACGCTGCAGCCGCTCTTGGTTAT
GAGGAGACCATTAAAGTACTTTTGAAGGCTGGAGTTGACCCGAAGGTGCG
ATCAACAACAGGTCAATCTGCCATTGATGTTGCGTTGACTGAAGAGATTA
GATACATGATGAGGAAATATGCAAAGAAATGCAACAAGGCGAAGCGAGAG
CAGAGTCTTTGTTCAGGCTCCTCCAACACTTCGAGGGGATCTAGTTGTGC
GAGCGTTAATCATTACTCCGACTGAGAGGTTGGTTTTATTGGCCTTACTC
GGTACACTTTTTGATGTCAGAATTCGGTAGAAAAGCTGTCGCCACTTTTG
TTTCTTCATTACTGGAAAAAACTGAGAAACATCATGGAGCTTGCAATCTT
CCTTAGATTTTGGTAGAAAAATTCCACATCATTATTGCTTAAAGACGTTT
GGAAGATCTATGATAATTATGACACTACCGCCAATGACATCTACGCATGC
ATTCCACAAGCGGTTCCAACCTTCATATTATTCTTATCTCTAAAACaagg
tgtcgaaattagaagagggctGTCGACATTAAACCAATTTCCAGTACTCT
ACCTAGCATATGTATTTACCTTTTATCGTTTTCGTGTTGATCTTATACAT
ATAAAAAGATGCCAGCCTATAGACAACTAGTATCAGTAGCGTGGTTGCAG
GAAGGGGCAGACCCCCAGCGGCCGATTTTTTCAGGGGGCGCCGAAATACA
AAGGGCGAAAAAAGACGTCTCTTattactaatttcggcgccctttgcttt
tttacaccttagaaTTGGCAGTTTTCCACCAAAAGGAGAGAAAATATCCA
GAAATTTTCGTACTCGCTTCCCTCGcgtaattttttaaaagatatttact
ttttgtNTTGTGCGAGCGTTAATCGTTACTCCGACTGAGAGGTTGATTTT
ATTGGCCTTACGTGGTACATTTTTTGATGTCAGAATTGGGTAGAAAAGCT
GTCGTCACTTTTGTTTCTTCATTACTGGACTGGTAACAGACGAGCAAAAC
ATCATGATGCTTCGTAATCTTCCTTAGATTTTGGTAGAAAAATTCCACAt
cgtttttgcttaaagacgTTTGAAGATCTTTGACCATTTTGACACTAACA
CCAAGGACATCTGCGCATGCACCTCCTTTGCGGAGTTACAGCCAAGAGCA
TCTTTTGATTGGCTGAAAGTACTGAAATCAGATGATATACGCGTAGTGAT
ACTCTACCTAGCATATGCATTTACCTTTTATCGTTTTCGTGTTGATACCA
gcttataccttatcggccctttttacgctggccctaatttaacgccggcc
cttattacgccacgagccgaaaaataacgccaataagggccggcgtaaaa
agggccgataaggtagacAACTAGTATGAGAGGGTTTAATAAAGACGTTG
AAATACGTTCATTTCAGTATCAATCAACCAAGCCATTTTAAGCGATAAAT
TCATACTCAAAGGAGTTCGTCTTGCGAACTGATATTTTTTAACATGTGAT
TTATGATGTTGATTAAATAAGTTTAGGATATATTGTTATAGAAtttcgaa
aatatattttagataggtatattatatttttttgtgtaaaaaaattGCAA
ACTAATGCAAAATGACATTTTATAAATATGATATTGTATACAGCAACATC
AAGCAAGAATACACGCTTTAATGGATTCGTCGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044232-exon-sc0005205-1491911889:721..2956 | TCONS_00044232-exon-sc0005205-1491911889:721..2956 | Clytia hemisphaerica | exon |
| TCONS_00044232-exon-sc0005205-1510915933:721..2956 | TCONS_00044232-exon-sc0005205-1510915933:721..2956 | Clytia hemisphaerica | exon |
| TCONS_00044232-exon-sc0005205-1575043694:721..2956 | TCONS_00044232-exon-sc0005205-1575043694:721..2956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005205 | supercontig | sc0005205:721..2956 + |
Blast
The following BLAST results are available for this feature:
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