TCONS_00044228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044228
Unique NameTCONS_00044228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044228 ID=TCONS_00044228|Name=TCONS_00044228|organism=Clytia hemisphaerica|type=transcript|length=400bp
AGTGTCCGTCAATGGACCTGAATTTGATTACGAATACTCGGACAAAGAAG
AACATAGACATTCAGGTTTCAACAGTAAAACGTCTTTGGAGAATGTCAGT
CAAGATTTGTCGGCAACATtgtagtcagcttgatggcaattttgtccagg
tctcaggctaattctacctgactattgAGCAATTGCGACATTCTTTCCTC
AAGTTCCATAAGCATTGTTTCCACCAATGAAGAGAGTAGTGATGTATACC
AATCGGTACCGATGACCCTTTCAAAGGTGGTCGACCAATTGAACGAGGGC
GTTGAGGGTGACGAGAGGGGCGGAACGTTGACTAGCGTCAAATCTGATGA
ATATGTGAATCAAGAAAGCAGTGATGGTGAGAGTTCAGATGATGGAGGTA
Run BLAST on NCBI

transcript from alignment at sc0005200:130..4604-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044228 ID=TCONS_00044228|Name=TCONS_00044228|organism=Clytia hemisphaerica|type=transcript|length=4475bp|location=Sequence derived from alignment at sc0005200:130..4604- (Clytia hemisphaerica)
AGTGTCCGTCAATGGACCTGAATTTGATTACGAATACTCGGACAAAGAAG
AACATAGACATTCAGGTATCTTTTCGTTTGTTTTGATTTGTCTTTTATTT
ATCAGTTAACACAAGGCTTCAAGGCCTAAAAATTTACAGCATTTACAGAA
CATTCAAAATCAAAATTACACATCAAATGATGAAAAACATTTAACAGTTT
AAAGTGAATCTTTTGATCGTTTTATTTCTTACCTCGTAAACAGTGTTCTT
TGTCTTGGAAAGATCGAAGTTAAGGTCTCCTGAAAACGAAACACTAGTTC
AATGATTGTACTTTTTGCCTCGTAAACAGTTCTTCGTCTTGGAAAGATCG
AAGTTAAGGTCCCCTGACAACCAAACTCTAATTTACTGATGATGGCCCTT
GAATTAGATAAGGACGAAACTTTTCAAATATAAATTTTATGTTTTAACAA
TAATACGATAAAGCCTCTGTTATTAGTAATTAAGTCATTTTACAAACCTC
TGGTGAAATCAACTTATATGATATCAAAAATCTATTCCCTTATAAAATAA
AAATATTATCTAACCTACTAGGTTTCAACAGTAAAACGTCTTTGGAGAAT
GTCAGTCAAGATTTGTCGGCAACATTGTAGTCAGGTAGAATTAGTTGAAA
TTTCACCACAACCCGGACAAAATTGCCATCAAGCTGAAAATTGGCACAGA
TGTTCTTTAGGGTATACTGAGTTACCAANNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNAAAACACATGGCTTGAAGCTGTAAGGAGATTCGC
TGCCATTGAGAATAGGGAATACTACTACATAATTCAAAAATAGTTGGACA
GTAGGGTCTTTTCTGATACTCACAACTTTTTCTGTGTTTATTTTCATGAC
TTCTTGTAAGCAAATTTTTTGTTCGTCTTGAAATTATCTTTCTTTTGATA
TATAATACGTGTATATTTGAAAAACTTTTTTTTCGGACATATTTTCCGGA
CATGTCCGGTTTTAAACTGTCCGAAAAAGTGGTCTCCCCTGTCCGGATTG
ATGGGGCTTTTTTTTTGGTAACTCAGTATACCCTAAAGAACAACTGTGCC
AATTTTCAGCTTGATGGCAATTTTGTCCAGGTCTCAGGCTAATTCTACCT
GACTATTGAGCAATTGCGACATTCTTTCCTCAAGTTCCATAAGCATTGTT
TCCACCAATGAAGAGAGTAGTGATGTATACCAATCGGTACCGATGACCCT
TTCAAAGGTAATTACAATGGACCCACACTCATTCGAACTTCATTTATTCG
AACCTTTCTATAATTCGAACTAGTTGTCAGTTCCCGTCGTGGAGCGACCT
TTGTAAAATGTTTTCTATAATTTGAATTTCTCTTTATTTCGGAACAAATT
GGATATTCGTTCGAGTTCGCATCAGCGGGAGTCAAACGAAGTTCTGATGT
TCTTGAACTCTCTCGTGATATTGACAATCTAAGACAACAACAAAAAACAA
AAACAGCAATAACCCCAAACTGAACACTATTGCTATAGTGCTATTATAGT
GCTATATTGCTATTGCTATACTATACCCCAATACCACTATCAGGCTGATA
GTCAAACAGCAGTAAGGTCTTCAAACTGAACGCTGTATTATTAGAGGTTC
CTAATAATAAACAAGAGAAATCTTTAGATCTAGTTGCAGTACTTTTATGA
AATACGGAACTAAACTAAAACAGACTAAAAAATCAGTATACCAGTATAAT
TTCAAAAATAGACAACTTAAAACAGAGAAGCTGCTAGATTTAATCCACCG
TCAAAAATGCGACTTCGCCTTTTTTGCCTNATCTAGTTGCAGTACTTTTA
TGAAATACGGGGCTAAAACAGACTAAAAAATCAGAATGGAATGGAATTTT
AGGAAGATTGGTTCTAAATCCATAATATGTATTTTTGTTATTTACTTACA
GGTGGTCGACCAATTGAACGAGGGCGTTGAGGGTGACGAGAGGGGCGGAA
CGTTGACTAGCGTCAAATCTGATGAATATGTGAATCAAGAAAGCAGTGAT
GGTGAGAGTTCAGATGATGGAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027871XLOC_027871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044228-exon-sc0005200-1575043694:4540..4604TCONS_00044228-exon-sc0005200-1575043694:4540..4604Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1575043694:3971..4033TCONS_00044228-exon-sc0005200-1575043694:3971..4033Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1575043694:948..1095TCONS_00044228-exon-sc0005200-1575043694:948..1095Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1575043694:130..253TCONS_00044228-exon-sc0005200-1575043694:130..253Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1510915933:4540..4604TCONS_00044228-exon-sc0005200-1510915933:4540..4604Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1510915933:3971..4033TCONS_00044228-exon-sc0005200-1510915933:3971..4033Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1510915933:948..1095TCONS_00044228-exon-sc0005200-1510915933:948..1095Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1510915933:130..253TCONS_00044228-exon-sc0005200-1510915933:130..253Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1491911889:4540..4604TCONS_00044228-exon-sc0005200-1491911889:4540..4604Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1491911889:3971..4033TCONS_00044228-exon-sc0005200-1491911889:3971..4033Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1491911889:948..1095TCONS_00044228-exon-sc0005200-1491911889:948..1095Clytia hemisphaericaexon
TCONS_00044228-exon-sc0005200-1491911889:130..253TCONS_00044228-exon-sc0005200-1491911889:130..253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005200supercontigsc0005200:130..4604 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84484	0	0	4.18726	9.48919	5.67181	0	12.2005	6.53259	1.17985	4.07072	7.0952	5.50659	0.888009	0.896118	0	0	0	0	0	0	0	0	0	9.06926	16.1882	0.848742	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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