TCONS_00044202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044202
Unique NameTCONS_00044202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3147

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044202 ID=TCONS_00044202|Name=TCONS_00044202|organism=Clytia hemisphaerica|type=transcript|length=3147bp
aaaaaatctgctggagtatttagttattcaaaagaccgtcGCATTCTCCC
AAACGACTAATCGCTCTAAGTGTGATATAATATATCATTTAGATGTCACT
GCTTACGATTGCTCGTTAATAATACATGGCCTCTAAAATCCCTTTTCTAG
CTAAATACAACGATAAAGTTTTATATATTACTATTTTGAAATTGGGGGAG
TTATGTATTATTACTTCAACCATCTTTTTGCGAAGAACCTTAGTATATTT
TAATATGTTCTTGTCTCACAAACATTTGTTTGTTATATATAGTCATTAAA
AGTGTTTCCATCTTTTAGGGAGTCGACGTCGACGATTAAACAATGTGTGA
TGCTACGGCGGTAAACTTAAAGTTGTTGGAAACTTGGTGTCACCATAGCA
ACTGAAAACAATCAGATAATTTGTAAACgaatgaaatcaattttaagcaa
aGCGAAAGTTGGACCACGATTGGTTATTCAAGATTCAACTATCAAGAAAG
GAATTTTAAATCATTCCCCTATGGAAAATAGAGCTTAATTTCGAAAAGAG
TCATCTACTTGACATTGGGTAAACAGCCCCTTGTCTGGGGCACCCAAGGG
TCACCCTTTAGTGAAGTTGTGCTTCGAAACATACAATTCTCAACTTTGAT
CTTTCAGACTTTTTTACCGTTGTTCTTAATCCAGAGCGCTGGATTTTATT
TTTCCGGTTGTTGGTTGGTTGTACTGGATATAGTGTTATCACTGGTTCTT
AGTAGTATGAAAACTTGTTCTATCGAATGAAGTATTTTGTTCATTTGATC
CAATGGGAATTTTGGGCAAGAAAAGGAGTTATGAAGTTTACGAATTTTGC
AAAGAATCCATATTTTGTACGGGGTCCAGCTTCTGCACTTCACCAAGTGA
TACAGACAACTTATTGTTAACTTATTTTATATTGGCCGAAACGGCAGCCA
GCTCTAACATCCCGACGAACGACATTGGCGGACACTCGCCCGCACCGTCC
CTTCCTGCTTCACAATCTGTTTTTGATTGTACACCGAACTGTGCGCTGAT
TTGGATAATTCTGGcgtttaaagcttttttttgtTTCCATTGCCATTATT
CTCTTAAGTCACAACTTACGGTCTCCCAAATCCTTTGGTGAGAATGGTGA
ATGAAATGTTTTGCTCCTATCTCCAGTGGCAAACATTTCGAAAACTATCC
TGCATCATTGCACTGGTCTACTAAAATTCATATTCTCATCCAAATTCGTC
TTTTTGAATTCATCAAAGTTGCTATATGACAGTTCACCACTTCAAATGGG
ATCGAGCCGAACGAACAAATGTAACCTCGAAGAAACGTTTGTAGTCTCTT
CTTTATGGGTACAGAAAGTAAATCTTCAATCCAGAAGAAAGCTTAACAAC
AAATACTTTATATATTTACTTCTACTGCTCTCGGTTGACATCGAAACCAA
TCCTGGACCATCGCCATGTCAAATTTGTTTCAAGACAGTCCGTCGCAACC
AGAAAAGATTCTAATGCACCTCCTGGGTTGATATAACTCACGTTTATTAC
ACGAAAATCGACCGAAAACTGTTAGTAGTCTAGAGATGAAACTCACTGGG
TTTGTCCAACTTGCATCCATACAGAGCTTCCATTTCCCGACATCTCAGAC
CAAGATTTACTCGACCTTCAACTCGATCGTCCAGTCGAACAACGGAAGTT
CATCCAAACAACGGACCAGATAATCTTCAACCAAAATCGTAAGCATACGT
CCATTGCAAATTTGAACACTCAATCTATCATGTCAACCTTCTCACAGTTT
GAATGTTATAAGTTTAATATTATCGCTGTTAGTGTTACCGAAACATGGAT
TACGAAcacaaaacaagaaaaagtcGTAAAGATAGACAATTATCTTTTCA
TACCGAAAAATCGACTGAACGTAAAGGGAGTTGGAGTAGCTTTTTACATC
CGAGAAGAGCTTACCTATAAAAAGGAGACTCGGCATTGAGAGATACAACA
TGAAAAGTAAaaggtaaaaataaaaactctaTCACATTTCCAGCACCATC
CCGAACGAGCGTAAATGTCATCCCAGCGAAATAAGTGATCACGCTGGATC
ACGACCTCACTTATACTATTATGAACATTCGAAAACAAAGGTTCGAGCCA
TGGCACAAGATCATCCGAAACGAAAAGAATTTCTCACTTCGAGATTATGT
GAGGATTTTTCTCAGCTCCCTTTGAACATTATTTACAGTTTTTATGATCC
CGATGCTCAAGTCGATAAACGCTTTAACACGCTAATTACTAACTGCTTAT
CCAGACACGCTCCAGAGAAACGAGTTAAGCTTACACGTCCCCTGCTCCGT
GGATGCAAGATCCTGATATTGTCCGATCTAGAAACTATTTAGAAGACCTT
CGAAAAAAGAAAAGTCGCCGAATCAGATGATGGATACCGAAAGGTCAGAA
ACAGTCACAAAAATAATGTTATTATCGCTCAGCCGGTCAGCGACTACATC
ACATCGCCCCTCGTTCACATCATTAACAACTCAATTAAAACCGGTATCTT
CCCGGACAAGTGTCTGCCCTATCCTGAAGGTGAGAAATCCTGCGGTTTCA
AAGGACTTTCGACCTGTTTCTATTCTACATTTACTAccaaaggatttaaa
aaaaatcattctcaTGCAGATCCTTGATCACATCGAGTCAGGAAGTCATC
GAAACCCCGTCAAATTCAAATATCGGAGAATGTTATATCCTTGGAAAGGG
ATCTCACGGAACTATCGAGATGGTACACCAATAATGGTCTAATATTCAAG
GACGACGAACTTCAAATGATAGTATTTCACAAACCAAGACCCCTCCCTAC
TGACCGATCCTACCTTGTTCGATCAAAAAATGGTCACTCTATTAAACAGG
AGTTAACGGTAAGTCTTTTGGGGGACATGATCGACCAAAACCTTACATGG
ATAGATCAAATTAATCACGTAACAAAATTTGCTCAGTCTTATCTTCAAGT
GTTGAAGCAATTTCAACGATTTACACCTTTCAACGTCAGGAAAACGCTGG
CAGNNNNgtactagtaatcgtatggtttggagtgcaattaacgattaatc
acgagtaacaaaggagaaaatagtaatttgcacgagtccgaaggacg
Run BLAST on NCBI

protein sequence of TCONS_00044202-protein

>TCONS_00044202-protein ID=TCONS_00044202-protein|Name=TCONS_00044202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MMDTERSETVTKIMLLSLSRSATTSHRPSFTSLTTQLKPVSSRTSVCPIL
KVRNPAVSKDFRPVSILHLLPKDLKKIILMQILDHIESGSHRNPVKFKYR
RMLYPWKGISRNYRDGTPIMV
Run BLAST on NCBI

transcript from alignment at sc0005153:86..4031+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044202 ID=TCONS_00044202|Name=TCONS_00044202|organism=Clytia hemisphaerica|type=transcript|length=3946bp|location=Sequence derived from alignment at sc0005153:86..4031+ (Clytia hemisphaerica)
aaaaaatctgctggagtatttagttattcaaaagaccgtcGCATTCTCCC AAACGACTAATCGCTCTAAGTGTGATATAATATATCATTTAGATGTCACT GCTTACGATTGCTCGTTAATAATACATGGCCTCTAAAATCCCTTTTCTAG CTAAATACAACGATAAAGTTTTATATATTACTATTTTGAAATTGGGGGAG TTATGTATTATTACTTCAACCATCTTTTTGCGAAGAACCTTAGTATATTT TAATATGTTCTTGTCTCACAAACATTTGTTTGTTATATATAGTCATTAAA AGTGTTTCCATCTTTTAGGGAGTCGACGTCGACGATTAAACAATGTGTGA TGCTACGGCGGTAAACTTAAAGTTGTTGGAAACTTGGTGTCACCATAGCA ACTGAAAACAATCAGATAATTTGTAAACgaatgaaatcaattttaagcaa aGCGAAAGTTGGACCACGATTGGTTATTCAAGATTCAACTATCAAGAAAG GAATTTTAAATCATTCCCCTATGGAAAATAGAGCTTAATTTCGAAAAGAG TCATCTACTTGACATTGGGTAAACAGCCCCTTGTCTGGGGCACCCAAGGG TCACCCTTTAGTGAAGTTGTGCTTCGAAACATACAATTCTCAACTTTGAT CTTTCAGACTTTTTTACCGTTGTTCTTAATCCAGAGCGCTGGATTTTATT TTTCCGGTTGTTGGTTGGTTGTACTGGATATAGTGTTATCACTGGTTCTT AGTAGTATGAAAACTTGTTCTATCGAATGAAGTATTTTGTTCATTTGATC CAATGGGAATTTTGGGCAAGAAAAGGAGTTATGAAGTTTACGAATTTTGC AAAGAATCCATATTTTGTACGGGGTCCAGCTTCTGCACTTCACCAAGTGA TACAGACAACTTATTGTTAACTTATTTTATATTGGCCGAAACGGCAGCCA GCTCTAACATCCCGACGAACGACATTGGCGGACACTCGCCCGCACCGTCC CTTCCTGCTTCACAATCTGTTTTTGATTGTACACCGAACTGTGCGCTGAT TTGGATAATTCTGGcgtttaaagcttttttttgtTTCCATTGCCATTATT CTCTTAAGTCACAACTTACGGTCTCCCAAATCCTTTGGTGAGAATGGTGA ATGAAATGTTTTGCTCCTATCTCCAGTGGCAAACATTTCGAAAACTATCC TGCATCATTGCACTGGTCTACTAAAATTCATATTCTCATCCAAATTCGTC TTTTTGAATTCATCAAAGTTGCTATATGGTGAGTTGGGTCAGCTTCAACC ATCATATAACTTGAAAGGAAATATTTCTAACAAAATCAAATGTTGACTTC AATCTTATTTCAGTATAATTGTCTTATATTGGTTTTCGGCTTCCAAAGGG CACTTTCTGATTTCACGTTTTGTTTTGATAGACAGCCTTTTTTGCGAATa cttactttaatgggataaatttcgcagattttgcggatttgggtgtcatc cgcgaaatcccaatgaaaaatttggaaaggtcttatccgcgaaatttttt tgaacACTACTCAAATAATGACAGATGATTTCTTTTAAATGTTAACTTGC ATAAAAaagcgctaataatgtgtattttgaCAACTagcaaaatcatgaaa atattgaCTCCTAATaatgccatccgcgaaattaagccccgcgaaaatta atcccattaatATAGCTGGATGTAGCCCCACgaacgaaaattaaaaaaaa gtgacgATTTAAAGGTGTCACAAACAGCACGAAAAGTCCAAAAGTTTGTC GattctcataaaaaagacaTTTTCTACAAAATTGAGTCTGGTCACACTCT TCTGATTTCCCTTCTtatatatgatttttttttacttttaagtgTTATAA ACTCGTCGTTAAAGCAGCAAAAAGTAGTTAAAAAGTTGCTTAAAGGTGAA GTACGCACTCCAGATTGATCCAGAAGTTCCGAAAATTGTGAAGAAACGTC CAAAAATGAACAATTATTTAAACTGACGTTATTTTTGGCCTTCTTCttac cttttcttttcttttcattcaCGAAAGACAGTTCACCACTTCAAATGGGA TCGAGCCGAACGAACAAATGTAACCTCGAAGAAACGTTTGTAGTCTCTTC TTTATGGGTACAGAAAGTAAATCTTCAATCCAGAAGAAAGCTTAACAACA AATACTTTATATATTTACTTCTACTGCTCTCGGTTGACATCGAAACCAAT CCTGGACCATCGCCATGTCAAATTTGTTTCAAGACAGTCCGTCGCAACCA GAAAAGATTCTAATGCACCTCCTGGGTTGATATAACTCACGTTTATTACA CGAAAATCGACCGAAAACTGTTAGTAGTCTAGAGATGAAACTCACTGGGT TTGTCCAACTTGCATCCATACAGAGCTTCCATTTCCCGACATCTCAGACC AAGATTTACTCGACCTTCAACTCGATCGTCCAGTCGAACAACGGAAGTTC ATCCAAACAACGGACCAGATAATCTTCAACCAAAATCGTAAGCATACGTC CATTGCAAATTTGAACACTCAATCTATCATGTCAACCTTCTCACAGTTTG AATGTTATAAGTTTAATATTATCGCTGTTAGTGTTACCGAAACATGGATT ACGAAcacaaaacaagaaaaagtcGTAAAGATAGACAATTATCTTTTCAT ACCGAAAAATCGACTGAACGTAAAGGGAGTTGGAGTAGCTTTTTACATCC GAGAAGAGCTTACCTATAAAAAGGAGACTCGGCATTGAGAGATACAACAT GAAAAGTAAaaggtaaaaataaaaactctaTCACATTTCCAGCACCATCC CGAACGAGCGTAAATGTCATCCCAGCGAAATAAGTGATCACGCTGGATCA CGACCTCACTTATACTATTATGAACATTCGAAAACAAAGGTTCGAGCCAT GGCACAAGATCATCCGAAACGAAAAGAATTTCTCACTTCGAGATTATGTG AGGATTTTTCTCAGCTCCCTTTGAACATTATTTACAGTTTTTATGATCCC GATGCTCAAGTCGATAAACGCTTTAACACGCTAATTACTAACTGCTTATC CAGACACGCTCCAGAGAAACGAGTTAAGCTTACACGTCCCCTGCTCCGTG GATGCAAGATCCTGATATTGTCCGATCTAGAAACTATTTAGAAGACCTTC GAAAAAAGAAAAGTCGCCGAATCAGATGATGGATACCGAAAGGTCAGAAA CAGTCACAAAAATAATGTTATTATCGCTCAGCCGGTCAGCGACTACATCA CATCGCCCCTCGTTCACATCATTAACAACTCAATTAAAACCGGTATCTTC CCGGACAAGTGTCTGCCCTATCCTGAAGGTGAGAAATCCTGCGGTTTCAA AGGACTTTCGACCTGTTTCTATTCTACATTTACTAccaaaggatttaaaa aaaatcattctcaTGCAGATCCTTGATCACATCGAGTCAGGAAGTCATCG AAACCCCGTCAAATTCAAATATCGGAGAATGTTATATCCTTGGAAAGGGA TCTCACGGAACTATCGAGATGGTACACCAATAATGGTCTAATATTCAAGG ACGACGAACTTCAAATGATAGTATTTCACAAACCAAGACCCCTCCCTACT GACCGATCCTACCTTGTTCGATCAAAAAATGGTCACTCTATTAAACAGGA GTTAACGGTAAGTCTTTTGGGGGACATGATCGACCAAAACCTTACATGGA TAGATCAAATTAATCACGTAACAAAATTTGCTCAGTCTTATCTTCAAGTG TTGAAGCAATTTCAACGATTTACACCTTTCAACGTCAGGAAAACGCTGGC AGNNNNgtactagtaatcgtatggtttggagtgcaattaacgattaatca cgagtaacaaaggagaaaatagtaatttgcacgagtccgaaggacg

Coding sequence (CDS) from alignment at sc0005153:86..4031+

>TCONS_00044202 ID=TCONS_00044202|Name=TCONS_00044202|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0005153:86..4031+ (Clytia hemisphaerica)
ATGATGGATACCGAAAGGTCAGAAACAGTCACAAAAATAATGTTATTATC
GCTCAGCCGGTCAGCGACTACATCACATCGCCCCTCGTTCACATCATTAA
CAACTCAATTAAAACCGGTATCTTCCCGGACAAGTGTCTGCCCTATCCTG
AAGGTGAGAAATCCTGCGGTTTCAAAGGACTTTCGACCTGTTTCTATTCT
ACATTTACTAccaaaggatttaaaaaaaatcattctcaTGCAGATCCTTG
ATCACATCGAGTCAGGAAGTCATCGAAACCCCGTCAAATTCAAATATCGG
AGAATGTTATATCCTTGGAAAGGGATCTCACGGAACTATCGAGATGGTAC
ACCAATAATGGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027847XLOC_027847Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044202-proteinTCONS_00044202-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044202-exon-sc0005153-1491911889:86..1363TCONS_00044202-exon-sc0005153-1491911889:86..1363Clytia hemisphaericaexon
TCONS_00044202-exon-sc0005153-1510915933:86..1363TCONS_00044202-exon-sc0005153-1510915933:86..1363Clytia hemisphaericaexon
TCONS_00044202-exon-sc0005153-1575043694:86..1363TCONS_00044202-exon-sc0005153-1575043694:86..1363Clytia hemisphaericaexon
TCONS_00044202-exon-sc0005153-1491911889:2163..4031TCONS_00044202-exon-sc0005153-1491911889:2163..4031Clytia hemisphaericaexon
TCONS_00044202-exon-sc0005153-1510915933:2163..4031TCONS_00044202-exon-sc0005153-1510915933:2163..4031Clytia hemisphaericaexon
TCONS_00044202-exon-sc0005153-1575043694:2163..4031TCONS_00044202-exon-sc0005153-1575043694:2163..4031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005153supercontigsc0005153:86..4031 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.359332 0.123998 0.266756 0.0634228 0.232198 0.533853 1.12881 1.95375 0.828444 2.27481 1.43163 1.12801 3.85987 3.22457 0.51245 0.358391 0.0752934 0.46292 0.32533 0.760026 0.246815 0.137653 0.22653 0.24714 1.00562 2.50015 0 0.372721 0.184883 0.2174
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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