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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044202 ID=TCONS_00044202|Name=TCONS_00044202|organism=Clytia hemisphaerica|type=transcript|length=3147bp aaaaaatctgctggagtatttagttattcaaaagaccgtcGCATTCTCCC AAACGACTAATCGCTCTAAGTGTGATATAATATATCATTTAGATGTCACT GCTTACGATTGCTCGTTAATAATACATGGCCTCTAAAATCCCTTTTCTAG CTAAATACAACGATAAAGTTTTATATATTACTATTTTGAAATTGGGGGAG TTATGTATTATTACTTCAACCATCTTTTTGCGAAGAACCTTAGTATATTT TAATATGTTCTTGTCTCACAAACATTTGTTTGTTATATATAGTCATTAAA AGTGTTTCCATCTTTTAGGGAGTCGACGTCGACGATTAAACAATGTGTGA TGCTACGGCGGTAAACTTAAAGTTGTTGGAAACTTGGTGTCACCATAGCA ACTGAAAACAATCAGATAATTTGTAAACgaatgaaatcaattttaagcaa aGCGAAAGTTGGACCACGATTGGTTATTCAAGATTCAACTATCAAGAAAG GAATTTTAAATCATTCCCCTATGGAAAATAGAGCTTAATTTCGAAAAGAG TCATCTACTTGACATTGGGTAAACAGCCCCTTGTCTGGGGCACCCAAGGG TCACCCTTTAGTGAAGTTGTGCTTCGAAACATACAATTCTCAACTTTGAT CTTTCAGACTTTTTTACCGTTGTTCTTAATCCAGAGCGCTGGATTTTATT TTTCCGGTTGTTGGTTGGTTGTACTGGATATAGTGTTATCACTGGTTCTT AGTAGTATGAAAACTTGTTCTATCGAATGAAGTATTTTGTTCATTTGATC CAATGGGAATTTTGGGCAAGAAAAGGAGTTATGAAGTTTACGAATTTTGC AAAGAATCCATATTTTGTACGGGGTCCAGCTTCTGCACTTCACCAAGTGA TACAGACAACTTATTGTTAACTTATTTTATATTGGCCGAAACGGCAGCCA GCTCTAACATCCCGACGAACGACATTGGCGGACACTCGCCCGCACCGTCC CTTCCTGCTTCACAATCTGTTTTTGATTGTACACCGAACTGTGCGCTGAT TTGGATAATTCTGGcgtttaaagcttttttttgtTTCCATTGCCATTATT CTCTTAAGTCACAACTTACGGTCTCCCAAATCCTTTGGTGAGAATGGTGA ATGAAATGTTTTGCTCCTATCTCCAGTGGCAAACATTTCGAAAACTATCC TGCATCATTGCACTGGTCTACTAAAATTCATATTCTCATCCAAATTCGTC TTTTTGAATTCATCAAAGTTGCTATATGACAGTTCACCACTTCAAATGGG ATCGAGCCGAACGAACAAATGTAACCTCGAAGAAACGTTTGTAGTCTCTT CTTTATGGGTACAGAAAGTAAATCTTCAATCCAGAAGAAAGCTTAACAAC AAATACTTTATATATTTACTTCTACTGCTCTCGGTTGACATCGAAACCAA TCCTGGACCATCGCCATGTCAAATTTGTTTCAAGACAGTCCGTCGCAACC AGAAAAGATTCTAATGCACCTCCTGGGTTGATATAACTCACGTTTATTAC ACGAAAATCGACCGAAAACTGTTAGTAGTCTAGAGATGAAACTCACTGGG TTTGTCCAACTTGCATCCATACAGAGCTTCCATTTCCCGACATCTCAGAC CAAGATTTACTCGACCTTCAACTCGATCGTCCAGTCGAACAACGGAAGTT CATCCAAACAACGGACCAGATAATCTTCAACCAAAATCGTAAGCATACGT CCATTGCAAATTTGAACACTCAATCTATCATGTCAACCTTCTCACAGTTT GAATGTTATAAGTTTAATATTATCGCTGTTAGTGTTACCGAAACATGGAT TACGAAcacaaaacaagaaaaagtcGTAAAGATAGACAATTATCTTTTCA TACCGAAAAATCGACTGAACGTAAAGGGAGTTGGAGTAGCTTTTTACATC CGAGAAGAGCTTACCTATAAAAAGGAGACTCGGCATTGAGAGATACAACA TGAAAAGTAAaaggtaaaaataaaaactctaTCACATTTCCAGCACCATC CCGAACGAGCGTAAATGTCATCCCAGCGAAATAAGTGATCACGCTGGATC ACGACCTCACTTATACTATTATGAACATTCGAAAACAAAGGTTCGAGCCA TGGCACAAGATCATCCGAAACGAAAAGAATTTCTCACTTCGAGATTATGT GAGGATTTTTCTCAGCTCCCTTTGAACATTATTTACAGTTTTTATGATCC CGATGCTCAAGTCGATAAACGCTTTAACACGCTAATTACTAACTGCTTAT CCAGACACGCTCCAGAGAAACGAGTTAAGCTTACACGTCCCCTGCTCCGT GGATGCAAGATCCTGATATTGTCCGATCTAGAAACTATTTAGAAGACCTT CGAAAAAAGAAAAGTCGCCGAATCAGATGATGGATACCGAAAGGTCAGAA ACAGTCACAAAAATAATGTTATTATCGCTCAGCCGGTCAGCGACTACATC ACATCGCCCCTCGTTCACATCATTAACAACTCAATTAAAACCGGTATCTT CCCGGACAAGTGTCTGCCCTATCCTGAAGGTGAGAAATCCTGCGGTTTCA AAGGACTTTCGACCTGTTTCTATTCTACATTTACTAccaaaggatttaaa aaaaatcattctcaTGCAGATCCTTGATCACATCGAGTCAGGAAGTCATC GAAACCCCGTCAAATTCAAATATCGGAGAATGTTATATCCTTGGAAAGGG ATCTCACGGAACTATCGAGATGGTACACCAATAATGGTCTAATATTCAAG GACGACGAACTTCAAATGATAGTATTTCACAAACCAAGACCCCTCCCTAC TGACCGATCCTACCTTGTTCGATCAAAAAATGGTCACTCTATTAAACAGG AGTTAACGGTAAGTCTTTTGGGGGACATGATCGACCAAAACCTTACATGG ATAGATCAAATTAATCACGTAACAAAATTTGCTCAGTCTTATCTTCAAGT GTTGAAGCAATTTCAACGATTTACACCTTTCAACGTCAGGAAAACGCTGG CAGNNNNgtactagtaatcgtatggtttggagtgcaattaacgattaatc acgagtaacaaaggagaaaatagtaatttgcacgagtccgaaggacg Run BLAST on NCBI protein sequence of TCONS_00044202-protein >TCONS_00044202-protein ID=TCONS_00044202-protein|Name=TCONS_00044202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MMDTERSETVTKIMLLSLSRSATTSHRPSFTSLTTQLKPVSSRTSVCPIL KVRNPAVSKDFRPVSILHLLPKDLKKIILMQILDHIESGSHRNPVKFKYR RMLYPWKGISRNYRDGTPIMV Run BLAST on NCBI transcript from alignment at sc0005153:86..4031+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044202 ID=TCONS_00044202|Name=TCONS_00044202|organism=Clytia hemisphaerica|type=transcript|length=3946bp|location=Sequence derived from alignment at sc0005153:86..4031+ (Clytia hemisphaerica) aaaaaatctgctggagtatttagttattcaaaagaccgtcGCATTCTCCC
AAACGACTAATCGCTCTAAGTGTGATATAATATATCATTTAGATGTCACT
GCTTACGATTGCTCGTTAATAATACATGGCCTCTAAAATCCCTTTTCTAG
CTAAATACAACGATAAAGTTTTATATATTACTATTTTGAAATTGGGGGAG
TTATGTATTATTACTTCAACCATCTTTTTGCGAAGAACCTTAGTATATTT
TAATATGTTCTTGTCTCACAAACATTTGTTTGTTATATATAGTCATTAAA
AGTGTTTCCATCTTTTAGGGAGTCGACGTCGACGATTAAACAATGTGTGA
TGCTACGGCGGTAAACTTAAAGTTGTTGGAAACTTGGTGTCACCATAGCA
ACTGAAAACAATCAGATAATTTGTAAACgaatgaaatcaattttaagcaa
aGCGAAAGTTGGACCACGATTGGTTATTCAAGATTCAACTATCAAGAAAG
GAATTTTAAATCATTCCCCTATGGAAAATAGAGCTTAATTTCGAAAAGAG
TCATCTACTTGACATTGGGTAAACAGCCCCTTGTCTGGGGCACCCAAGGG
TCACCCTTTAGTGAAGTTGTGCTTCGAAACATACAATTCTCAACTTTGAT
CTTTCAGACTTTTTTACCGTTGTTCTTAATCCAGAGCGCTGGATTTTATT
TTTCCGGTTGTTGGTTGGTTGTACTGGATATAGTGTTATCACTGGTTCTT
AGTAGTATGAAAACTTGTTCTATCGAATGAAGTATTTTGTTCATTTGATC
CAATGGGAATTTTGGGCAAGAAAAGGAGTTATGAAGTTTACGAATTTTGC
AAAGAATCCATATTTTGTACGGGGTCCAGCTTCTGCACTTCACCAAGTGA
TACAGACAACTTATTGTTAACTTATTTTATATTGGCCGAAACGGCAGCCA
GCTCTAACATCCCGACGAACGACATTGGCGGACACTCGCCCGCACCGTCC
CTTCCTGCTTCACAATCTGTTTTTGATTGTACACCGAACTGTGCGCTGAT
TTGGATAATTCTGGcgtttaaagcttttttttgtTTCCATTGCCATTATT
CTCTTAAGTCACAACTTACGGTCTCCCAAATCCTTTGGTGAGAATGGTGA
ATGAAATGTTTTGCTCCTATCTCCAGTGGCAAACATTTCGAAAACTATCC
TGCATCATTGCACTGGTCTACTAAAATTCATATTCTCATCCAAATTCGTC
TTTTTGAATTCATCAAAGTTGCTATATGGTGAGTTGGGTCAGCTTCAACC
ATCATATAACTTGAAAGGAAATATTTCTAACAAAATCAAATGTTGACTTC
AATCTTATTTCAGTATAATTGTCTTATATTGGTTTTCGGCTTCCAAAGGG
CACTTTCTGATTTCACGTTTTGTTTTGATAGACAGCCTTTTTTGCGAATa
cttactttaatgggataaatttcgcagattttgcggatttgggtgtcatc
cgcgaaatcccaatgaaaaatttggaaaggtcttatccgcgaaatttttt
tgaacACTACTCAAATAATGACAGATGATTTCTTTTAAATGTTAACTTGC
ATAAAAaagcgctaataatgtgtattttgaCAACTagcaaaatcatgaaa
atattgaCTCCTAATaatgccatccgcgaaattaagccccgcgaaaatta
atcccattaatATAGCTGGATGTAGCCCCACgaacgaaaattaaaaaaaa
gtgacgATTTAAAGGTGTCACAAACAGCACGAAAAGTCCAAAAGTTTGTC
GattctcataaaaaagacaTTTTCTACAAAATTGAGTCTGGTCACACTCT
TCTGATTTCCCTTCTtatatatgatttttttttacttttaagtgTTATAA
ACTCGTCGTTAAAGCAGCAAAAAGTAGTTAAAAAGTTGCTTAAAGGTGAA
GTACGCACTCCAGATTGATCCAGAAGTTCCGAAAATTGTGAAGAAACGTC
CAAAAATGAACAATTATTTAAACTGACGTTATTTTTGGCCTTCTTCttac
cttttcttttcttttcattcaCGAAAGACAGTTCACCACTTCAAATGGGA
TCGAGCCGAACGAACAAATGTAACCTCGAAGAAACGTTTGTAGTCTCTTC
TTTATGGGTACAGAAAGTAAATCTTCAATCCAGAAGAAAGCTTAACAACA
AATACTTTATATATTTACTTCTACTGCTCTCGGTTGACATCGAAACCAAT
CCTGGACCATCGCCATGTCAAATTTGTTTCAAGACAGTCCGTCGCAACCA
GAAAAGATTCTAATGCACCTCCTGGGTTGATATAACTCACGTTTATTACA
CGAAAATCGACCGAAAACTGTTAGTAGTCTAGAGATGAAACTCACTGGGT
TTGTCCAACTTGCATCCATACAGAGCTTCCATTTCCCGACATCTCAGACC
AAGATTTACTCGACCTTCAACTCGATCGTCCAGTCGAACAACGGAAGTTC
ATCCAAACAACGGACCAGATAATCTTCAACCAAAATCGTAAGCATACGTC
CATTGCAAATTTGAACACTCAATCTATCATGTCAACCTTCTCACAGTTTG
AATGTTATAAGTTTAATATTATCGCTGTTAGTGTTACCGAAACATGGATT
ACGAAcacaaaacaagaaaaagtcGTAAAGATAGACAATTATCTTTTCAT
ACCGAAAAATCGACTGAACGTAAAGGGAGTTGGAGTAGCTTTTTACATCC
GAGAAGAGCTTACCTATAAAAAGGAGACTCGGCATTGAGAGATACAACAT
GAAAAGTAAaaggtaaaaataaaaactctaTCACATTTCCAGCACCATCC
CGAACGAGCGTAAATGTCATCCCAGCGAAATAAGTGATCACGCTGGATCA
CGACCTCACTTATACTATTATGAACATTCGAAAACAAAGGTTCGAGCCAT
GGCACAAGATCATCCGAAACGAAAAGAATTTCTCACTTCGAGATTATGTG
AGGATTTTTCTCAGCTCCCTTTGAACATTATTTACAGTTTTTATGATCCC
GATGCTCAAGTCGATAAACGCTTTAACACGCTAATTACTAACTGCTTATC
CAGACACGCTCCAGAGAAACGAGTTAAGCTTACACGTCCCCTGCTCCGTG
GATGCAAGATCCTGATATTGTCCGATCTAGAAACTATTTAGAAGACCTTC
GAAAAAAGAAAAGTCGCCGAATCAGATGATGGATACCGAAAGGTCAGAAA
CAGTCACAAAAATAATGTTATTATCGCTCAGCCGGTCAGCGACTACATCA
CATCGCCCCTCGTTCACATCATTAACAACTCAATTAAAACCGGTATCTTC
CCGGACAAGTGTCTGCCCTATCCTGAAGGTGAGAAATCCTGCGGTTTCAA
AGGACTTTCGACCTGTTTCTATTCTACATTTACTAccaaaggatttaaaa
aaaatcattctcaTGCAGATCCTTGATCACATCGAGTCAGGAAGTCATCG
AAACCCCGTCAAATTCAAATATCGGAGAATGTTATATCCTTGGAAAGGGA
TCTCACGGAACTATCGAGATGGTACACCAATAATGGTCTAATATTCAAGG
ACGACGAACTTCAAATGATAGTATTTCACAAACCAAGACCCCTCCCTACT
GACCGATCCTACCTTGTTCGATCAAAAAATGGTCACTCTATTAAACAGGA
GTTAACGGTAAGTCTTTTGGGGGACATGATCGACCAAAACCTTACATGGA
TAGATCAAATTAATCACGTAACAAAATTTGCTCAGTCTTATCTTCAAGTG
TTGAAGCAATTTCAACGATTTACACCTTTCAACGTCAGGAAAACGCTGGC
AGNNNNgtactagtaatcgtatggtttggagtgcaattaacgattaatca
cgagtaacaaaggagaaaatagtaatttgcacgagtccgaaggacg Coding sequence (CDS) from alignment at sc0005153:86..4031+ >TCONS_00044202 ID=TCONS_00044202|Name=TCONS_00044202|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0005153:86..4031+ (Clytia hemisphaerica) ATGATGGATACCGAAAGGTCAGAAACAGTCACAAAAATAATGTTATTATC GCTCAGCCGGTCAGCGACTACATCACATCGCCCCTCGTTCACATCATTAA CAACTCAATTAAAACCGGTATCTTCCCGGACAAGTGTCTGCCCTATCCTG AAGGTGAGAAATCCTGCGGTTTCAAAGGACTTTCGACCTGTTTCTATTCT ACATTTACTAccaaaggatttaaaaaaaatcattctcaTGCAGATCCTTG ATCACATCGAGTCAGGAAGTCATCGAAACCCCGTCAAATTCAAATATCGG AGAATGTTATATCCTTGGAAAGGGATCTCACGGAACTATCGAGATGGTAC ACCAATAATGGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00044202-exon-sc0005153-1491911889:86..1363 | TCONS_00044202-exon-sc0005153-1491911889:86..1363 | Clytia hemisphaerica | exon |
TCONS_00044202-exon-sc0005153-1510915933:86..1363 | TCONS_00044202-exon-sc0005153-1510915933:86..1363 | Clytia hemisphaerica | exon |
TCONS_00044202-exon-sc0005153-1575043694:86..1363 | TCONS_00044202-exon-sc0005153-1575043694:86..1363 | Clytia hemisphaerica | exon |
TCONS_00044202-exon-sc0005153-1491911889:2163..4031 | TCONS_00044202-exon-sc0005153-1491911889:2163..4031 | Clytia hemisphaerica | exon |
TCONS_00044202-exon-sc0005153-1510915933:2163..4031 | TCONS_00044202-exon-sc0005153-1510915933:2163..4031 | Clytia hemisphaerica | exon |
TCONS_00044202-exon-sc0005153-1575043694:2163..4031 | TCONS_00044202-exon-sc0005153-1575043694:2163..4031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0005153 | supercontig | sc0005153:86..4031 + |
Blast
The following BLAST results are available for this feature:
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