TCONS_00044192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044192
Unique NameTCONS_00044192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044192 ID=TCONS_00044192|Name=TCONS_00044192|organism=Clytia hemisphaerica|type=transcript|length=361bp
AAATGCTATGTGCTGAGAGTAACGAACAAACGTAAAATTATTGATCATAA
GTATAAGATTCATGATCAAGAACTGAAAATAGTTGACAAAGCTAAATATC
TGGGTGTCACCATCTCAAAAAACTTATCCTGGAAACCTCATGTTGCTATT
ATCACATCAAAAGCAAACTCCACTCGTATTTTTCTACAGAGAAACTCGTC
AATGACTGATTCTGAAACACGATTAGCATACTATAAAACATACATACGTC
CACTTGTTGAATATGCATCTTCTGTATGGGACACTCCAGGAATTGAAACA
TTGACATCTAAAGTTGAGGCTGTACAAAGAAAGTCACTCCGTTGGATTTA
CAACAAATGGG
Run BLAST on NCBI

protein sequence of TCONS_00044192-protein

>TCONS_00044192-protein ID=TCONS_00044192-protein|Name=TCONS_00044192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
KCYVLRVTNKRKIIDHKYKIHDQELKIVDKAKYLGVTISKNLSWKPHVAI
ITSKANSTRIFLQRNSSMTDSETRLAYYKTYIRPLVEYASSVWDTPGIET
LTSKVEAVQRKSLRWIYNKW
Run BLAST on NCBI

transcript from alignment at sc0005135:625..985

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044192 ID=TCONS_00044192|Name=TCONS_00044192|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at sc0005135:625..985 (Clytia hemisphaerica)
CCCATTTGTTGTAAATCCAACGGAGTGACTTTCTTTGTACAGCCTCAACT
TTAGATGTCAATGTTTCAATTCCTGGAGTGTCCCATACAGAAGATGCATA
TTCAACAAGTGGACGTATGTATGTTTTATAGTATGCTAATCGTGTTTCAG
AATCAGTCATTGACGAGTTTCTCTGTAGAAAAATACGAGTGGAGTTTGCT
TTTGATGTGATAATAGCAACATGAGGTTTCCAGGATAAGTTTTTTGAGAT
GGTGACACCCAGATATTTAGCTTTGTCAACTATTTTCAGTTCTTGATCAT
GAATCTTATACTTATGATCAATAATTTTACGTTTGTTCGTTACTCTCAGC
ACATAGCATTT

Coding sequence (CDS) from alignment at sc0005135:625..985

>TCONS_00044192 ID=TCONS_00044192|Name=TCONS_00044192|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0005135:625..985 (Clytia hemisphaerica)
CCATTTGTTGTAAATCCAACGGAGTGACTTTCTTTGTACAGCCTCAACTT
TAGATGTCAATGTTTCAATTCCTGGAGTGTCCCATACAGAAGATGCATAT
TCAACAAGTGGACGTATGTATGTTTTATAGTATGCTAATCGTGTTTCAGA
ATCAGTCATTGACGAGTTTCTCTGTAGAAAAATACGAGTGGAGTTTGCTT
TTGATGTGATAATAGCAACATGAGGTTTCCAGGATAAGTTTTTTGAGATG
GTGACACCCAGATATTTAGCTTTGTCAACTATTTTCAGTTCTTGATCATG
AATCTTATACTTATGATCAATAATTTTACGTTTGTTCGTTACTCTCAGCA
CATAGCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027838XLOC_027838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044192-exon-sc0005135-1491911889:625..985TCONS_00044192-exon-sc0005135-1491911889:625..985Clytia hemisphaericaexon
TCONS_00044192-exon-sc0005135-1510915933:625..985TCONS_00044192-exon-sc0005135-1510915933:625..985Clytia hemisphaericaexon
TCONS_00044192-exon-sc0005135-1575043694:625..985TCONS_00044192-exon-sc0005135-1575043694:625..985Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044192-proteinTCONS_00044192-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005135supercontigsc0005135:625..985 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.829454	1.14294	1.64856	0.906396	2.65892	0.532737	0	2.06336	1.39743	1.63084	3.04771	0.92982	1.51516	0.982799	1.24406	2.37607	1.24685	2.48798	1.06082	2.16052	2.694	3.5272	2.73645	2.39208	2.25538	0.763728	2.98158	0	1.51066	2.37235
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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