TCONS_00044191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044191
Unique NameTCONS_00044191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044191 ID=TCONS_00044191|Name=TCONS_00044191|organism=Clytia hemisphaerica|type=transcript|length=365bp
ATTAAACAATTTCAacaaattaatgttttgGTTAACAATGCTGGAATAAT
GGTATCTGGAAATTGTCAAACAACAACAATGGAAGATTATGATAAACAAA
TGAATATAAACACACGtTCTGTGTTTTATTTGACCAAACTGGCAATCCCa
cacttgataaaaacaaaaggtATGAAAAAATAGAATGTATTtatcaaaat
gaattttttaatcATATATTATTTGAACTAACAATGACGATTTACTGTCA
TCGTAATTATGTTATATTATCGATTTCCAGCCTAAAATTGATTCGTgtta
aaatatatttggataTCTATTATGTACTAGGAATAACATGGCATTCTCGG
GTGATTTGGATTCAT
Run BLAST on NCBI

transcript from alignment at sc0005134:1..1184+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044191 ID=TCONS_00044191|Name=TCONS_00044191|organism=Clytia hemisphaerica|type=transcript|length=1184bp|location=Sequence derived from alignment at sc0005134:1..1184+ (Clytia hemisphaerica)
ATTAAACAATTTCAacaaattaatgttttggtaaGTTTTTCATATACTTT AATCGTTACTATAAGATTCTTTCTTTTAGTTGTTTTCACAGCTTTTCAGA GTTCTACATTCGATCATACACCAGTTATCTGGACTTAGTTTAGCTTTTCT TTTCTGATACCTGATGTTTAGTCAGAGCACCTGAGTCAGTGCCCTGACTA TACCACAACCATGTCACCTAGTTTCCATTTGTTTGTCTTCTTTCAGTGTG ATAATCATAACGGCATCCATCTCTTCCGATAGTTAAAATCAATTTGTCTC TTCTTTCAGGTTAACAATGCTGGAATAATGGTATCTGGAAATTGTCAAAC AACAACAATGGAAGATTATGATAAACAAATGAATATAAACACACGGTACA ACTTTAGAAACCACTTTTTAATATGCTGATTGGTGCAGTAGGTTAAGCGA ACTCAGATGTACAGGAAGATTTGNTTTAGAAACCACTTTTTAATATGCTG ATTGGTGCAGTAGGTTAAGCGAACTCAGATGTACAGGAAGATTTGGATTT TAAGCTTGGAACCAAGTGAACCAAAGCTTAAAACCTGATTTTTCGATATT AATGACCGATCATGTATGTGACTACTGAGTCTACTTGTCCATTATGGACT GGTAGTTCAGTGACAGAGGAAATGCATGAGCAAAGGCACGATCTTGAGTT CGAGTCTCAACAGGTCGTCCATAAGTTTTTCTTACGAAACTGGCCACTCT GTTAACACTGAGCCAAGCAATGTTCATCCCATAACACATGGTAAAACTGA CTGAATTAACatttgtttgattgttgttTTCAACTGATAATCATTATAAT ACTCCAGGAAAAAggttcttacatttttttttcagcatACCTAAGTtata tttttgaattgaaattaaaattttctctttttcagtTCTGTGTTTTATTT GACCAAACTGGCAATCCCacacttgataaaaacaaaaggtATGAAAAAAT AGAATGTATTtatcaaaatgaattttttaatcATATATTATTTGAACTAA CAATGACGATTTACTGTCATCGTAATTATGTTATATTATCGATTTCCAGC CTAAAATTGATTCGTgttaaaatatatttggataTCTATTATGTACTAGG AATAACATGGCATTCTCGGGTGATTTGGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027837XLOC_027837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044191-exon-sc0005134-1491911889:1..30TCONS_00044191-exon-sc0005134-1491911889:1..30Clytia hemisphaericaexon
TCONS_00044191-exon-sc0005134-1510915933:1..30TCONS_00044191-exon-sc0005134-1510915933:1..30Clytia hemisphaericaexon
TCONS_00044191-exon-sc0005134-1575043694:1..30TCONS_00044191-exon-sc0005134-1575043694:1..30Clytia hemisphaericaexon
TCONS_00044191-exon-sc0005134-1491911889:310..395TCONS_00044191-exon-sc0005134-1491911889:310..395Clytia hemisphaericaexon
TCONS_00044191-exon-sc0005134-1510915933:310..395TCONS_00044191-exon-sc0005134-1510915933:310..395Clytia hemisphaericaexon
TCONS_00044191-exon-sc0005134-1575043694:310..395TCONS_00044191-exon-sc0005134-1575043694:310..395Clytia hemisphaericaexon
TCONS_00044191-exon-sc0005134-1491911889:936..1184TCONS_00044191-exon-sc0005134-1491911889:936..1184Clytia hemisphaericaexon
TCONS_00044191-exon-sc0005134-1510915933:936..1184TCONS_00044191-exon-sc0005134-1510915933:936..1184Clytia hemisphaericaexon
TCONS_00044191-exon-sc0005134-1575043694:936..1184TCONS_00044191-exon-sc0005134-1575043694:936..1184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005134supercontigsc0005134:1..1184 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59195 1.5524 2.31748 2.01537 2.45352 1.45411 2.63147 3.55847 11.8819 18.2784 8.98593 12.1169 9.2263 6.12594 1.0331 0.831505 0.170724 0.699948 0 0.252978 0.439768 0 0.260757 0.474132 1.46503 3.26877 0.62368 0 0.75726 1.0287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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