TCONS_00044183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044183
Unique NameTCONS_00044183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044183 ID=TCONS_00044183|Name=TCONS_00044183|organism=Clytia hemisphaerica|type=transcript|length=385bp
AAGTCTCAGCTCACTCCATCTCAGAGGATTACTTATCTAGGCTTTGTAAT
AGACTCAACCAAAATGACTATAACTCTTACTGAAAAAAGAACCAATGCTT
TAAAAAGACACCTCAATATTCTACATAGCCTGTCAGAACCTACTATTCGA
TATGTAGCAAAAGTCAATTTCAGCTCTACCAGCATCAAAGTATGGTGCTC
TACATTATAGaaaccttgaaaaagaaaagattaaaGCTTTAAAACAAAAC
TGTGGTAATTTTGATGCTAAAATGACACTCTCAGACCTTAGCAAGATTTG
AAATGGTGGATccaaaacatcaacaaaattgaAAACTGGATCCAACCACC
TCCTATTCAGAAAAAACTCTTCACTGACTCCTCAG
Run BLAST on NCBI

transcript from alignment at sc0005126:3568..3952

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044183 ID=TCONS_00044183|Name=TCONS_00044183|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at sc0005126:3568..3952 (Clytia hemisphaerica)
CTGAGGAGTCAGTGAAGAGTTTTTTCTGAATAGGAGGTGGTTGGATCCAG
TTTtcaattttgttgatgttttggATCCACCATTTCAAATCTTGCTAAGG
TCTGAGAGTGTCATTTTAGCATCAAAATTACCACAGTTTTGTTTTAAAGC
tttaatcttttctttttcaaggtttCTATAATGTAGAGCACCATACTTTG
ATGCTGGTAGAGCTGAAATTGACTTTTGCTACATATCGAATAGTAGGTTC
TGACAGGCTATGTAGAATATTGAGGTGTCTTTTTAAAGCATTGGTTCTTT
TTTCAGTAAGAGTTATAGTCATTTTGGTTGAGTCTATTACAAAGCCTAGA
TAAGTAATCCTCTGAGATGGAGTGAGCTGAGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027829XLOC_027829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044183-exon-sc0005126-1491911889:3568..3952TCONS_00044183-exon-sc0005126-1491911889:3568..3952Clytia hemisphaericaexon
TCONS_00044183-exon-sc0005126-1510915933:3568..3952TCONS_00044183-exon-sc0005126-1510915933:3568..3952Clytia hemisphaericaexon
TCONS_00044183-exon-sc0005126-1575043694:3568..3952TCONS_00044183-exon-sc0005126-1575043694:3568..3952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005126supercontigsc0005126:3568..3952 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.403156	0.982852	1.36942	2.45624	0.271839	0.214811	0.518321	1.21311	0.169866	0	0	0.40275	0	0	0	0.122836	0	0.310204	0	0	0.389794	0	0	0	0	1.15893	0	0.294985	0.223736	0.455903
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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