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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044178 ID=TCONS_00044178|Name=TCONS_00044178|organism=Clytia hemisphaerica|type=transcript|length=1013bp
TACAAACGAAACAGCCACTTCTATGGATCAATTGAAAAAACAAATTGCAA
ATGAAACCCTTAGAAAGCAAGTCCGGCTAGCAAGCAGCGCAATGTATATC
GAACACGAGGGTACTGTGTACCATATTGCAAGATTTTTATCCCTAACCGA
GGGTAAAGTATATTCTCCGAATGCCAGTCGCTCAGAGCGCTGGAAATCTA
CCAATCAAACATCTTTCTTTGAGCAGCTCAACCCAAACATCCTCTCAGAG
ACTAGCGTNAATCTACCAATCAAACATCTTTCTTTGAGCAGCTCAACCCA
AACATCCTCTCAGAGACTAGCGTCAAGATTAACGATTTATGTTCTTTTTG
GCACGACAACAACTGCGTGTCTGGCAGGATAGTCAGAATAATGCGACGGT
ATGGAACAAGGACTGCTCATCCTGCCCATGAAGCCAAAATTGAAGATTTA
AAGATTGTGAGTTTTTTTGTTCGCTGCCACACATTTGATGCCAAAAAATT
AACACTGACACCAGAAATGAAAATCAATTATGTCTTAGTTAAAGGTATTT
CTTTAGTCAGACGACTCTCCTTGGAGCTAAGCCAGCTTGATCTTGACTTT
TTGTTAAATCCGAAAGATAAGTTGCCGCCGATGGAGAAGGAACCAACAGA
AAAACAAACTGACAAACAAAATGTTGATACCTTTGATGTTCAGCTGATGA
AGGAAAAACTAACTTCTCTCAACATCAAATTTCGAAAGAATGCGTCGAAA
AAAAGCTTAATTGCGTTATTGAGAGAAGCAGAACAATCCTAgattattca
ttttttataagtttcatCATCTGTGGATTTGCGTATGTTAGTAGNTCAAG
ATTAACGATTTATGTTCTTTTTGGCACGACAACAACTGCGTGTCTGGCAG
GATAGTCAGAATAATGCGACGGTATGGAACAAGGACTTAATTGCGTTATT
GAGAGAAGCAGAACAATCCTAgattattcattttttataagtttcatCAT
CTGTGGATTTGCG Run BLAST on NCBI protein sequence of TCONS_00044178-protein >TCONS_00044178-protein ID=TCONS_00044178-protein|Name=TCONS_00044178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MRRYGTRTAHPAHEAKIEDLKIVSFFVRCHTFDAKKLTLTPEMKINYVLV
KGISLVRRLSLELSQLDLDFLLNPKDKLPPMEKEPTEKQTDKQNVDTFDV
QLMKEKLTSLNIKFRKNASKKSLIALLREAEQS Run BLAST on NCBI transcript from alignment at sc0005118:3616..4628 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044178 ID=TCONS_00044178|Name=TCONS_00044178|organism=Clytia hemisphaerica|type=transcript|length=1013bp|location=Sequence derived from alignment at sc0005118:3616..4628 (Clytia hemisphaerica)
CGCAAATCCACAGATGatgaaacttataaaaaatgaataatcTAGGATTG
TTCTGCTTCTCTCAATAACGCAATTAAGTCCTTGTTCCATACCGTCGCAT
TATTCTGACTATCCTGCCAGACACGCAGTTGTTGTCGTGCCAAAAAGAAC
ATAAATCGTTAATCTTGANCTACTAACATACGCAAATCCACAGATGatga
aacttataaaaaatgaataatcTAGGATTGTTCTGCTTCTCTCAATAACG
CAATTAAGCTTTTTTTCGACGCATTCTTTCGAAATTTGATGTTGAGAGAA
GTTAGTTTTTCCTTCATCAGCTGAACATCAAAGGTATCAACATTTTGTTT
GTCAGTTTGTTTTTCTGTTGGTTCCTTCTCCATCGGCGGCAACTTATCTT
TCGGATTTAACAAAAAGTCAAGATCAAGCTGGCTTAGCTCCAAGGAGAGT
CGTCTGACTAAAGAAATACCTTTAACTAAGACATAATTGATTTTCATTTC
TGGTGTCAGTGTTAATTTTTTGGCATCAAATGTGTGGCAGCGAACAAAAA
AACTCACAATCTTTAAATCTTCAATTTTGGCTTCATGGGCAGGATGAGCA
GTCCTTGTTCCATACCGTCGCATTATTCTGACTATCCTGCCAGACACGCA
GTTGTTGTCGTGCCAAAAAGAACATAAATCGTTAATCTTGACGCTAGTCT
CTGAGAGGATGTTTGGGTTGAGCTGCTCAAAGAAAGATGTTTGATTGGTA
GATTNACGCTAGTCTCTGAGAGGATGTTTGGGTTGAGCTGCTCAAAGAAA
GATGTTTGATTGGTAGATTTCCAGCGCTCTGAGCGACTGGCATTCGGAGA
ATATACTTTACCCTCGGTTAGGGATAAAAATCTTGCAATATGGTACACAG
TACCCTCGTGTTCGATATACATTGCGCTGCTTGCTAGCCGGACTTGCTTT
CTAAGGGTTTCATTTGCAATTTGTTTTTTCAATTGATCCATAGAAGTGGC
TGTTTCGTTTGTA Coding sequence (CDS) from alignment at sc0005118:3616..4628 >TCONS_00044178 ID=TCONS_00044178|Name=TCONS_00044178|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0005118:3616..4628 (Clytia hemisphaerica)
cTAGGATTGTTCTGCTTCTCTCAATAACGCAATTAAGCTTTTTTTCGACG
CATTCTTTCGAAATTTGATGTTGAGAGAAGTTAGTTTTTCCTTCATCAGC
TGAACATCAAAGGTATCAACATTTTGTTTGTCAGTTTGTTTTTCTGTTGG
TTCCTTCTCCATCGGCGGCAACTTATCTTTCGGATTTAACAAAAAGTCAA
GATCAAGCTGGCTTAGCTCCAAGGAGAGTCGTCTGACTAAAGAAATACCT
TTAACTAAGACATAATTGATTTTCATTTCTGGTGTCAGTGTTAATTTTTT
GGCATCAAATGTGTGGCAGCGAACAAAAAAACTCACAATCTTTAAATCTT
CAATTTTGGCTTCATGGGCAGGATGAGCAGTCCTTGTTCCATACCGTCGC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044178-exon-sc0005118-1491911889:3616..4628 | TCONS_00044178-exon-sc0005118-1491911889:3616..4628 | Clytia hemisphaerica | exon |
| TCONS_00044178-exon-sc0005118-1510915933:3616..4628 | TCONS_00044178-exon-sc0005118-1510915933:3616..4628 | Clytia hemisphaerica | exon |
| TCONS_00044178-exon-sc0005118-1575043694:3616..4628 | TCONS_00044178-exon-sc0005118-1575043694:3616..4628 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005118 | supercontig | sc0005118:3616..4628 . |
Blast
The following BLAST results are available for this feature:
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