TCONS_00044082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044082
Unique NameTCONS_00044082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044082 ID=TCONS_00044082|Name=TCONS_00044082|organism=Clytia hemisphaerica|type=transcript|length=240bp
GAGctaaaaaatgtatatttttctacaaaaatcatAATATATTTTAATCA
TATAATAAACTATCATCAAAAGATAAATATCTACTAACAAATGTATTGAG
ATTGATAATTTTAGATCAGTTTGGACTAGTTTGGAGAGAAAAGAGAAGAT
ATGCAGATATAAGATGATCAAAAACTTTAAGAGATTAtaaacttcaaatt
tttcatctcATGTCACAGACTGTCACAAGTGTGAAGGTAA
Run BLAST on NCBI

transcript from alignment at sc0004936:1305..1544

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044082 ID=TCONS_00044082|Name=TCONS_00044082|organism=Clytia hemisphaerica|type=transcript|length=240bp|location=Sequence derived from alignment at sc0004936:1305..1544 (Clytia hemisphaerica)
TTACCTTCACACTTGTGACAGTCTGTGACATgagatgaaaaatttgaagt
ttaTAATCTCTTAAAGTTTTTGATCATCTTATATCTGCATATCTTCTCTT
TTCTCTCCAAACTAGTCCAAACTGATCTAAAATTATCAATCTCAATACAT
TTGTTAGTAGATATTTATCTTTTGATGATAGTTTATTATATGATTAAAAT
ATATTatgatttttgtagaaaaatatacattttttagCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027733XLOC_027733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044082-exon-sc0004936-1491911889:1305..1544TCONS_00044082-exon-sc0004936-1491911889:1305..1544Clytia hemisphaericaexon
TCONS_00044082-exon-sc0004936-1510915933:1305..1544TCONS_00044082-exon-sc0004936-1510915933:1305..1544Clytia hemisphaericaexon
TCONS_00044082-exon-sc0004936-1575043694:1305..1544TCONS_00044082-exon-sc0004936-1575043694:1305..1544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004936supercontigsc0004936:1305..1544 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.63886	0.958493	1.15638	0	2.27384	1.87768	0	0	1.19639	0	0.510736	0.548098	0	0	0	0	0	1.27253	1.03129	0	0	0	1.23332	1.31623	2.23619	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top