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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044078 ID=TCONS_00044078|Name=TCONS_00044078|organism=Clytia hemisphaerica|type=transcript|length=1373bp
CTAGATATTCAGAAACATCAAAGTATTTCGAACAATACTCTCTGGACCAG
CTATCAGGCGCAAGTGTTAGTAATTGTACCTTTTCAGGTATATGAACTGA
TAAGTAACTTTTCTTTGATAGCAGTGCACAGTTTATCAAATTCGTCTGCC
TTCTTATCAATTGTCTCTCTTTTATCATTATTTGAAGGTTCACTGTCCTT
TAATTCTTCCATTGGGAAGTTGTAAACAGTAGATGACTCTTCAAATTTAC
TCATTacagttttaagtttttcttttgctCTATTCACTCTCGAATGTGGC
GGAAGAGAATGAAGATTTACTGGAGATACTCCGACTGATTCAAAGCTCGA
ATTTAACCTTTTCCTTGGTGATTCTTCATACTCAACATGTTCATCCTcag
tttcattttgactttccCCTTCAGTTTCTGTTTCTGTATCCATCTTTTCA
GGCTCTACATTAGCTCTTGAAATGATTTCCTGATACTTTTTAATACACTG
CCGACAAAGANACATGTTCATCCTcagtttcattttgactttccCCTTCA
GTTTCTGTTTCTGTATCCATTTTTTCAGGCTCTACATTAGCTCGTGAAAT
GATTTCCTGATACTGTTTAATACACTGCCGACAAAGCTTTTGTCCTGGAA
CAACAAGATACCCTTTCTCTTTCAGTTTAGTTGCCTCAATTAAAGAAATT
GTCTTTTGTCCTTTTGCCTTATGACTCTTTGGCGTATCCAACCCAATGCA
TTTAACTTGATTCCTTTCAAAAACACGTCCAAATTGCTCAAAATGACGGT
TGCAAATTGTAGAAATATCATCTTTAGAATCATGTAAGTTGGATCTCCAA
ATTAAAATCGCTTTTTCGTCAGAAAAGTCCGTCAATGTACGTAGAGTAGT
TGTCCTGGTGTTATTTAATTGGTTACAAGCCTGATTGAGAATTTCTCCAA
CTGCAGTTATTTTCTTCACTCATTTTTTCAAACACTTCATCTTCCATTCA
TATTATTATTAAAACTGATATCCACATTTTCCTAGGCTACTTATACTGTC
TTAATATTCTCAAGGTGAGGATATAAAAGATGTAACCATGCTAACCTTTA
TCTGCTTTTCTTATGAACTTAGTGTGAAAGCATGAGGTACTCTCAAAATA
AAGACATGTATTTAATGTATCCATTCTGCAAATGAGGTCACCATGAGGCA
TCCAGAAAGTGATGAAAATGGGATTTTTCTCCAGAAAATATATTTAACAA
ATAAATTATTCTTCATGATATACTTACTATGAGTAAAGAGGGTCAAAGGT
TGAAGCAAAGTGTAGGtcaaagcaaataaaataaataagtttgaaaacaa
catttcaaatcaaatgaggAAAA Run BLAST on NCBI protein sequence of TCONS_00044078-protein >TCONS_00044078-protein ID=TCONS_00044078-protein|Name=TCONS_00044078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MKLRMNMXLCRQCIKKYQEIISRANVEPEKMDTETETEGESQNETEDEHV
EYEESPRKRLNSSFESVGVSPVNLHSLPPHSRVNRAKEKLKTVMSKFEES
STVYNFPMEELKDSEPSNNDKRETIDKKADEFDKLCTAIKEKLLISSYT Run BLAST on NCBI transcript from alignment at sc0004931:3639..5011 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044078 ID=TCONS_00044078|Name=TCONS_00044078|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at sc0004931:3639..5011 (Clytia hemisphaerica)
TTTTcctcatttgatttgaaatgttgttttcaaacttatttattttattt
gctttgaCCTACACTTTGCTTCAACCTTTGACCCTCTTTACTCATAGTAA
GTATATCATGAAGAATAATTTATTTGTTAAATATATTTTCTGGAGAAAAA
TCCCATTTTCATCACTTTCTGGATGCCTCATGGTGACCTCATTTGCAGAA
TGGATACATTAAATACATGTCTTTATTTTGAGAGTACCTCATGCTTTCAC
ACTAAGTTCATAAGAAAAGCAGATAAAGGTTAGCATGGTTACATCTTTTA
TATCCTCACCTTGAGAATATTAAGACAGTATAAGTAGCCTAGGAAAATGT
GGATATCAGTTTTAATAATAATATGAATGGAAGATGAAGTGTTTGAAAAA
ATGAGTGAAGAAAATAACTGCAGTTGGAGAAATTCTCAATCAGGCTTGTA
ACCAATTAAATAACACCAGGACAACTACTCTACGTACATTGACGGACTTT
TCTGACGAAAAAGCGATTTTAATTTGGAGATCCAACTTACATGATTCTAA
AGATGATATTTCTACAATTTGCAACCGTCATTTTGAGCAATTTGGACGTG
TTTTTGAAAGGAATCAAGTTAAATGCATTGGGTTGGATACGCCAAAGAGT
CATAAGGCAAAAGGACAAAAGACAATTTCTTTAATTGAGGCAACTAAACT
GAAAGAGAAAGGGTATCTTGTTGTTCCAGGACAAAAGCTTTGTCGGCAGT
GTATTAAACAGTATCAGGAAATCATTTCACGAGCTAATGTAGAGCCTGAA
AAAATGGATACAGAAACAGAAACTGAAGGggaaagtcaaaatgaaactgA
GGATGAACATGTNTCTTTGTCGGCAGTGTATTAAAAAGTATCAGGAAATC
ATTTCAAGAGCTAATGTAGAGCCTGAAAAGATGGATACAGAAACAGAAAC
TGAAGGggaaagtcaaaatgaaactgAGGATGAACATGTTGAGTATGAAG
AATCACCAAGGAAAAGGTTAAATTCGAGCTTTGAATCAGTCGGAGTATCT
CCAGTAAATCTTCATTCTCTTCCGCCACATTCGAGAGTGAATAGagcaaa
agaaaaacttaaaactgtAATGAGTAAATTTGAAGAGTCATCTACTGTTT
ACAACTTCCCAATGGAAGAATTAAAGGACAGTGAACCTTCAAATAATGAT
AAAAGAGAGACAATTGATAAGAAGGCAGACGAATTTGATAAACTGTGCAC
TGCTATCAAAGAAAAGTTACTTATCAGTTCATATACCTGAAAAGGTACAA
TTACTAACACTTGCGCCTGATAGCTGGTCCAGAGAGTATTGTTCGAAATA
CTTTGATGTTTCTGAATATCTAG Coding sequence (CDS) from alignment at sc0004931:3639..5011 >TCONS_00044078 ID=TCONS_00044078|Name=TCONS_00044078|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0004931:3639..5011 (Clytia hemisphaerica)
atgaaactgAGGATGAACATGTNTCTTTGTCGGCAGTGTATTAAAAAGTA
TCAGGAAATCATTTCAAGAGCTAATGTAGAGCCTGAAAAGATGGATACAG
AAACAGAAACTGAAGGggaaagtcaaaatgaaactgAGGATGAACATGTT
GAGTATGAAGAATCACCAAGGAAAAGGTTAAATTCGAGCTTTGAATCAGT
CGGAGTATCTCCAGTAAATCTTCATTCTCTTCCGCCACATTCGAGAGTGA
ATAGagcaaaagaaaaacttaaaactgtAATGAGTAAATTTGAAGAGTCA
TCTACTGTTTACAACTTCCCAATGGAAGAATTAAAGGACAGTGAACCTTC
AAATAATGATAAAAGAGAGACAATTGATAAGAAGGCAGACGAATTTGATA
AACTGTGCACTGCTATCAAAGAAAAGTTACTTATCAGTTCATATACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044078-exon-sc0004931-1491911889:3639..5011 | TCONS_00044078-exon-sc0004931-1491911889:3639..5011 | Clytia hemisphaerica | exon |
| TCONS_00044078-exon-sc0004931-1510915933:3639..5011 | TCONS_00044078-exon-sc0004931-1510915933:3639..5011 | Clytia hemisphaerica | exon |
| TCONS_00044078-exon-sc0004931-1575043694:3639..5011 | TCONS_00044078-exon-sc0004931-1575043694:3639..5011 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004931 | supercontig | sc0004931:3639..5011 . |
Blast
The following BLAST results are available for this feature:
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