TCONS_00044075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044075
Unique NameTCONS_00044075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044075 ID=TCONS_00044075|Name=TCONS_00044075|organism=Clytia hemisphaerica|type=transcript|length=289bp
TAAGCTGCTGTTGTAGGAACTGTTATTGGAATGGACGAACACGTGAAAAG
TAAGGAAAGTAAGAGAAGCTACCATCAAAACGAATACAATTCTGTTCTTG
CAATCCTTACCAATGCCCAGAAAGATTTACAAGCTTCACAACAAGAAGCC
GCAGCACTGGAAACTTCTTTAAAAGCAAAACAACAAGAAATCAAAACACA
TcaagagaaaatttcaaattatcttTCGAAAATGCAAACATTACAAGAAG
AGAAGAAATTAACACAAATTGAAGATGTTAATTTCTTCT
Run BLAST on NCBI

transcript from alignment at sc0004928:3397..3685

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044075 ID=TCONS_00044075|Name=TCONS_00044075|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at sc0004928:3397..3685 (Clytia hemisphaerica)
AGAAGAAATTAACATCTTCAATTTGTGTTAATTTCTTCTCTTCTTGTAAT
GTTTGCATTTTCGAaagataatttgaaattttctcttgATGTGTTTTGAT
TTCTTGTTGTTTTGCTTTTAAAGAAGTTTCCAGTGCTGCGGCTTCTTGTT
GTGAAGCTTGTAAATCTTTCTGGGCATTGGTAAGGATTGCAAGAACAGAA
TTGTATTCGTTTTGATGGTAGCTTCTCTTACTTTCCTTACTTTTCACGTG
TTCGTCCATTCCAATAACAGTTCCTACAACAGCAGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027727XLOC_027727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044075-exon-sc0004928-1491911889:3397..3685TCONS_00044075-exon-sc0004928-1491911889:3397..3685Clytia hemisphaericaexon
TCONS_00044075-exon-sc0004928-1510915933:3397..3685TCONS_00044075-exon-sc0004928-1510915933:3397..3685Clytia hemisphaericaexon
TCONS_00044075-exon-sc0004928-1575043694:3397..3685TCONS_00044075-exon-sc0004928-1575043694:3397..3685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004928supercontigsc0004928:3397..3685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.76666	0.430524	2.0747	0.654844	0.00751327	0	0	0.869627	2.67304	6.16345	0.394267	0.51983	0.781424	0.995301	8.30381	23.4992	33.1079	28.3894	27.2111	23.9165	106.353	96.0472	6.09573	13.2064	18.6421	21.7048	8.18181	22.0358	0	0.880805
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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