TCONS_00044067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044067
Unique NameTCONS_00044067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044067 ID=TCONS_00044067|Name=TCONS_00044067|organism=Clytia hemisphaerica|type=transcript|length=507bp
NNGCTggaatttcacggattttcagCATTTCCTAAATTTacgctttagat
ttaagcatcccctcaagcatttttcagccttatcaagctttcgacctaag
catctctgagcctgttttcggatttttgtttagttttacAAGTTGGATTG
TCAATTTCGATCGTTTACCATAATTTGTTCTCCGTCAATCAATCGAAATA
GCACGATACTCTTTCTCCGATGGCAGTCTTTTGAAGTATTATCACGttgt
tatcatttcaaatttcgtTCAAGAACTTCAACGTATGGCAGCATAAATGT
CCAGCATCCAGTTTACAGCTAAAATGGAAAGGGAATTGCTCCAATCATAA
GCCATGATCTGCATGGTTAAAAGCAGGCGTCATGATGGATAGTTTTAATT
TTCTACCAAGAAGGCCACACAGGATATCAATGGAACTGATCGTATCGAAT
GATATGGTATGATGCGATAGAAAGGAATAACAAAAGCTCTACAATACTGT
ATGCTTT
Run BLAST on NCBI

transcript from alignment at sc0004915:51..557

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044067 ID=TCONS_00044067|Name=TCONS_00044067|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at sc0004915:51..557 (Clytia hemisphaerica)
AAAGCATACAGTATTGTAGAGCTTTTGTTATTCCTTTCTATCGCATCATA
CCATATCATTCGATACGATCAGTTCCATTGATATCCTGTGTGGCCTTCTT
GGTAGAAAATTAAAACTATCCATCATGACGCCTGCTTTTAACCATGCAGA
TCATGGCTTATGATTGGAGCAATTCCCTTTCCATTTTAGCTGTAAACTGG
ATGCTGGACATTTATGCTGCCATACGTTGAAGTTCTTGAacgaaatttga
aatgataacaaCGTGATAATACTTCAAAAGACTGCCATCGGAGAAAGAGT
ATCGTGCTATTTCGATTGATTGACGGAGAACAAATTATGGTAAACGATCG
AAATTGACAATCCAACTTgtaaaactaaacaaaaatccgaaaacaggctc
agagatgcttaggtcgaaagcttgataaggctgaaaaatgcttgagggga
tgcttaaatctaaagcgtAAATTTAGGAAATGctgaaaatccgtgaaatt
ccAGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027719XLOC_027719Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044067-exon-sc0004915-1491911889:51..557TCONS_00044067-exon-sc0004915-1491911889:51..557Clytia hemisphaericaexon
TCONS_00044067-exon-sc0004915-1510915933:51..557TCONS_00044067-exon-sc0004915-1510915933:51..557Clytia hemisphaericaexon
TCONS_00044067-exon-sc0004915-1575043694:51..557TCONS_00044067-exon-sc0004915-1575043694:51..557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004915supercontigsc0004915:51..557 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.17377	6.60885	1.50671	1.05702	16.3117	12.1865	17.0161	15.4488	11.6364	10.8302	11.9508	12.8203	12.5282	8.70752	14.6086	15.7551	10.4735	16.1615	12.147	15.2034	21.827	22.6623	14.0348	16.7639	12.4425	19.9042	18.2431	14.1015	14.4759	13.1788
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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