TCONS_00044066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044066
Unique NameTCONS_00044066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044066 ID=TCONS_00044066|Name=TCONS_00044066|organism=Clytia hemisphaerica|type=transcript|length=589bp
GCTATTCATTGTTGATCAGTCATAAAAATCTTCTATAAATAATAATGCCT
AGAGTCACATTGTTTGCAAGTAAATAAAACCTATTAAAAATCTACCATTA
AaaacaacagcaacaaaattgTGATGCGCATACAAATATATCCTTAAACc
atattcatactaggcttttaggggttGTCCAGAACTAGGGGGAGGGGGGG
GCTTTTCTTGTACacccccttaacttttgatttagTTGGCATTTTTGGAT
GGAATTTGGCACACNGGCTTTTCTTGTACacccccttaacttttgattta
gTTGGCATATTTGGATGGAATTTGGCACATAAGATCTTTGTCATTTAAGC
AGGCAAATTTCCAGGATTTGGAGCTGCTaccgtttttaatcaaaaaacta
AGTTTCAGAATGTGCCTTAGGCTCGAAAAAGCATACAGGGGCCTTTGTAA
ACAGCCCAACTGGTCCAGGACAGTCCTGGTGTGGTCTATTGGGCAAAGCC
CCAAGAAAATTATGCCTTTTTGCGGAATTAAGTGCTATAATGTCAAATAT
TTGAAGACATTTCACTCATTTACCTTCATTTACCTTTTT
Run BLAST on NCBI

transcript from alignment at sc0004909:5096..5684

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044066 ID=TCONS_00044066|Name=TCONS_00044066|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at sc0004909:5096..5684 (Clytia hemisphaerica)
AAAAAGGTAAATGAAGGTAAATGAGTGAAATGTCTTCAAATATTTGACAT
TATAGCACTTAATTCCGCAAAAAGGCATAATTTTCTTGGGGCTTTGCCCA
ATAGACCACACCAGGACTGTCCTGGACCAGTTGGGCTGTTTACAAAGGCC
CCTGTATGCTTTTTCGAGCCTAAGGCACATTCTGAAACTtagttttttga
ttaaaaacggtAGCAGCTCCAAATCCTGGAAATTTGCCTGCTTAAATGAC
AAAGATCTTATGTGCCAAATTCCATCCAAATATGCCAActaaatcaaaag
ttaagggggtGTACAAGAAAAGCCNGTGTGCCAAATTCCATCCAAAAATG
CCAActaaatcaaaagttaagggggtGTACAAGAAAAGCCCCCCCCTCCC
CCTAGTTCTGGACaacccctaaaagcctagtatgaatatgGTTTAAGGAT
ATATTTGTATGCGCATCAcaattttgttgctgttgtttTTAATGGTAGAT
TTTTAATAGGTTTTATTTACTTGCAAACAATGTGACTCTAGGCATTATTA
TTTATAGAAGATTTTTATGACTGATCAACAATGAATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027718XLOC_027718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044066-exon-sc0004909-1491911889:5096..5684TCONS_00044066-exon-sc0004909-1491911889:5096..5684Clytia hemisphaericaexon
TCONS_00044066-exon-sc0004909-1510915933:5096..5684TCONS_00044066-exon-sc0004909-1510915933:5096..5684Clytia hemisphaericaexon
TCONS_00044066-exon-sc0004909-1575043694:5096..5684TCONS_00044066-exon-sc0004909-1575043694:5096..5684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004909supercontigsc0004909:5096..5684 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27096	1.02429	0	0.439621	2.21942	1.56655	1.67194	1.70769	0.848856	0.995563	1.03513	0.924113	0.380448	0.257934	0.731661	0.276962	0.0979973	0.536774	0	0.415417	0.728597	0.367576	1.28177	2.08504	0.671099	1.01226	0.323517	0.766984	0.36821	1.17919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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