TCONS_00044061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044061
Unique NameTCONS_00044061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044061 ID=TCONS_00044061|Name=TCONS_00044061|organism=Clytia hemisphaerica|type=transcript|length=340bp
ggatttttctaagcactttgaaCTGGGGCCGTTTTTGTAAATTTAGATTG
AGTTTCTAATAAGTCTGAAAGGGCATCTTCTCAACAAACTGTGCATCCAT
AAAGTTTTGGGTTTTGTAGGCATTTTTAAAACCTCCCCCACAGTGGGTCC
AGAGCCAAGCCCTGGTGGAGGTTCATAGGGTAGTAGAATGTGTAGATATT
TAGCTTCAAGTTTCTTCTGAGTTTGGGTTACGATAGTAGCCATAGCGTTG
GTTTGTTTGATACCGTTTTGAGTATTAATGCTAGCATTAAAGTTATCTGA
GATGGCTTGGATAAGTCCATTGACTGCGCTAAATTGGGAC
Run BLAST on NCBI

transcript from alignment at sc0004900:14..353

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044061 ID=TCONS_00044061|Name=TCONS_00044061|organism=Clytia hemisphaerica|type=transcript|length=340bp|location=Sequence derived from alignment at sc0004900:14..353 (Clytia hemisphaerica)
GTCCCAATTTAGCGCAGTCAATGGACTTATCCAAGCCATCTCAGATAACT
TTAATGCTAGCATTAATACTCAAAACGGTATCAAACAAACCAACGCTATG
GCTACTATCGTAACCCAAACTCAGAAGAAACTTGAAGCTAAATATCTACA
CATTCTACTACCCTATGAACCTCCACCAGGGCTTGGCTCTGGACCCACTG
TGGGGGAGGTTTTAAAAATGCCTACAAAACCCAAAACTTTATGGATGCAC
AGTTTGTTGAGAAGATGCCCTTTCAGACTTATTAGAAACTCAATCTAAAT
TTACAAAAACGGCCCCAGttcaaagtgcttagaaaaatcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027713XLOC_027713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044061-exon-sc0004900-1491911889:14..353TCONS_00044061-exon-sc0004900-1491911889:14..353Clytia hemisphaericaexon
TCONS_00044061-exon-sc0004900-1510915933:14..353TCONS_00044061-exon-sc0004900-1510915933:14..353Clytia hemisphaericaexon
TCONS_00044061-exon-sc0004900-1575043694:14..353TCONS_00044061-exon-sc0004900-1575043694:14..353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004900supercontigsc0004900:14..353 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.417405	1.26172	0.0325446	0.299996	0	0	1.17324	2.61154	0.839479	3.61748	2.37116	0.901825	0.99249	0	0.768904	0	0.609912	0.62514	1.72733	0.903763	0.453793	1.14947	0	0	0.290768	0	0.53324	1.43132	0.776554	0.277924
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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