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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044056 ID=TCONS_00044056|Name=TCONS_00044056|organism=Clytia hemisphaerica|type=transcript|length=1424bpRun BLAST on NCBI protein sequence of TCONS_00044056-protein >TCONS_00044056-protein ID=TCONS_00044056-protein|Name=TCONS_00044056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp TLIFKRRFEYLLDEYYFSDVKVNWFEAERLCIARGGTLATILSQEEDNFMRun BLAST on NCBI transcript from alignment at sc0004893:47..5077- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00044056 ID=TCONS_00044056|Name=TCONS_00044056|organism=Clytia hemisphaerica|type=transcript|length=5031bp|location=Sequence derived from alignment at sc0004893:47..5077- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0004893:47..5077- >TCONS_00044056 ID=TCONS_00044056|Name=TCONS_00044056|organism=Clytia hemisphaerica|type=CDS|length=12798bp|location=Sequence derived from alignment at sc0004893:47..5077- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00044056 vs. Swiss-Prot (Human)
Match: MRC1 (Macrophage mannose receptor 1 OS=Homo sapiens GN=MRC1 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.731e-21 Identity = 110/456 (24.12%), Postives = 187/456 (41.01%), Query Frame = 2
Query: 62 KVNWFEAERLCIARGGTLATILSQEEDNFMLDQLTKRKPSNERTINYWLDGV--KRNMKYVWNDGSEMIYKNLGGGRADESSYTEGCVLVMYGPGFLVPEP-YSWLKVSCTNDGYPIQYVCKGKNLNDSPSIXXXXXXXXXXKPLQSLVTWGSNEYYFSDVKVNWFEAERLCIARGGTLATILSQEEDNFMLDQLTKRKPSNERTISYWLDG-VKRNMKYVWNDGSEMIYKNLGGGRADESSYTEGCVLVMYGPGFLVPEPYSWLKVSCTNDGYPIQYVCKGKNLNDSXXXXXXXXXXXXXXSESLPSLVTWGAMQY---------FFSDEKLNWSESQQKCTDLGGTLATIFSQDEDDFIRGQLRDRKSPSDRSINYW--LDGVKKDMKYVWNDGLEMIYTN----LRSGRTNENSFKEG-CVSVGYSPTGTIPVYSWWTNDCADKRFPYQYICK 1369
K WFE+ C A GG LA+I ++EE + +T ++ +WL + + W+DGS + Y+N G + E C G L +P SW ++C + I + KG+ P+ T V + +YYFS K A C G L +I S+ E F+ + + N+ +Y++ + + K+ W DGS++ Y + G + ++ E CV + GF W ++C GYP ++C+ N ++ S+PS G Y F +E+ NW E+++ C GG L +I ++ E F+ ++ D + + W L+ V + ++W DG + YTN GR + S+++ CV + + W + C KR YIC+
Sbjct: 670 KKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKL---FWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYC-------GELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPPVTE---DGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNR----NDAQSAYFIGLLISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGF-------WNDINC---GYPNAFICQRHN-------SSINATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLTYHMK------DSTFSAWTGLNDVNSEHTFLWTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNE--AGKWMDDTCDSKR---GYICQ 1080 HSP 2 Score: 82.8037 bits (203), Expect = 1.420e-16 Identity = 109/451 (24.17%), Postives = 185/451 (41.02%), Query Frame = 2
Query: 47 YFSDVKVNWFEAERLCIARGGTLATILSQEEDNFMLDQLTKRKPSNERTINYW--LDGVKRNMKYVWNDGSEMIYKNLG----GGRADESSYTEG-CVLVMYGPGFLVPEPYSWLKVSCTNDGYPIQYVCKGKNLNDSPSIXXXXXXXXXXKPLQSLVTWGSNEYYFSDVKVNWFEAERLCIARGGTLATILSQEEDNFMLDQLTKRKPSNERTISYWLDGVKRNMKYVWNDGSEMIYKNLGGGRADESSYTEGCVLVMYGPGFLVPEPYSWLKVSCTNDGYPIQYVCKGKNLNDSXXXXXXXXXXXXXXSESLPSLVTWGAMQYFFSDEKLNWSESQQKCTDLGGTLATIFSQDEDDFIRGQLRDRKSPSDRSINYWLDGVKKDMK--YVWNDGLEMIYTNLRSGRTNENSFKEGCVSVGYSPTGTIPVYSWWTN-DCADKRFPYQYICK 1369
+ + + NW EA + CI GG L +I +++E F+ + + T + W L+ V ++W DG + Y N G GGR SY + CV+++ G E W+ +C + Y+C+ ++ PS+T T T V +G + Y K W EAE C +A+IL + F Q+ + SNER + L+ + +Y W D + Y N ADE CV +L + Y W C Y ++CK ++ P S+ + G Y S NW ++ +C +G +L +I S E F L R P N+W+ G+ ++++ ++W + + + N +G + + + CV++ S +W+N C+ + YICK
Sbjct: 962 FMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLTYHM------KDSTFSAWTGLNDVNSEHTFLWTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGAS---NEAGKWMDDTCDSKR---GYICQTRS---DPSLTNPPATIQT----DGFVKYGKSSYSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQM---ETSNER-VWIALNSNLTDNQYTWTDKWRVRYTNWA---ADEPKLKSACV-------YLDLDGY-WKTAHCNESFY---FLCKRS--DEIPATEPPQLPGRCPESDHTAWIPFHGHCYYIESSYTRNWGQASLECLRMGSSLVSIESAAESSF----LSYRVEPLKSKTNFWI-GLFRNVEGTWLWINNSPVSFVNWNTG--DPSGERNDCVALHASS-------GFWSNIHCSSYK---GYICK 1356 The following BLAST results are available for this feature:
BLAST of TCONS_00044056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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