TCONS_00044055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044055
Unique NameTCONS_00044055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044055 ID=TCONS_00044055|Name=TCONS_00044055|organism=Clytia hemisphaerica|type=transcript|length=574bp
tcttgTACGAATGATGGATACCCAATACAATACGTTTGCAAAGGAAAAAA
TCTCAATGATTCGCCTACAATTACGACAACAACCACGGTCGCACCAACCA
CACCATCAGAATCTTTGCCATCCTTGGTGACTTGGGGAGCAATGCAATAT
TTCTTCAGCGATGAAAAACTGAACTGGTCAGAATCGCAACAAAAATGTAC
TGATCTTGGAGGAACCCTTGCAACAATCTTCTCACAAGACGAAGACGATT
TTATTCGTGGCCAGTTGCGCGATAGAAAATCACCATCTGACCGTTCTATC
AACTACTGGCTTGATGGTGTCAAAAAGGATATGAAATATGTATGGAACGA
TGGCCTTGAGATGATTTACACCAATTTAAGATCAGGAAGAACAAACGAAA
ACAGCTTTAAAGAAGGATGTGTTTCTGTTGGTTATTCACCGACCGGTACC
ATCCCTGTATACTCTTGGTGGACCAATGATTGTGCAGATAAAAGATTCCC
ATATCAATACATTTGTAAAGGAGAAGATTTAGaaaaaccatcaaaaagcg
ctgttttgaaatttttggaaagta
Run BLAST on NCBI

transcript from alignment at sc0004893:47..4033-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044055 ID=TCONS_00044055|Name=TCONS_00044055|organism=Clytia hemisphaerica|type=transcript|length=3987bp|location=Sequence derived from alignment at sc0004893:47..4033- (Clytia hemisphaerica)
TCTTGTACGAATGATGGATACCCAATACAATACGTTTGCAAAGGAAAAAA
TCTCAATGGTTAGTAATACAATGACCTAAACTTTATACTTTGTATTTTTT
CATACATCGAAGGGGAGTGGAGGGGAGGCTGCAACAATATCATTTCAATA
AAAATCATTCCAAAAATATTCTGATACTTGACCTAATGGACACTCATATT
TGCCATAAGGATATGGAACATTGTCAAAAATTTTTCAATACCCATTGACA
TTATATTTTTCACCCCCTTTGTGAAATTTTTTCTAGAAGAGCCAATTTTT
CAATTTTTCTCACGATAAATAGGGGAATAAATAGATCTTACAAGTAGATC
TTTTTTCAACATTAGATTCGCCTTCCATTACGACCGCAGCCACCACGACG
CCTACCCCCAAACCTTTACAATCCTTGGTGACTTGGGGCTCGAGTAAGTA
TTTAATACATAAAACCTGATCATTCAAATTCATTGTAAAGCCAATATGGT
ATCAGGCAAAATTCAATTAATTGGTTAAATGGTCAGAATGCTTCGGAACA
TATATCTAAAGAATTTAGCAGTTGTACAGTTTTGATAAATTTTAAGTCTC
AGGCTTTTTTAGCATCTAAGTACATTCAAATTTCATTGGAGGTTGTTATG
TCTTCAGACTTAAGTTACAGCGATTTGCTAGTCTAGACACACTTATCTTC
AAGTGCCGTTTTGNTTTTGATAAATTTTAAGTCTCAGGCTTTCTTAGCAT
CTAAGTACATTCAAATTTCATTGGAGGTTGTTATGTCTTCAGACTTATTT
TACAGCGATTTGCTAGTCTAGACACACTTATCTTCAAGCGCCGTTTTGAA
TATCTTTTAGATGAGTATTACTTTAGTGATGTCAAAGTGAATTGGTTTGA
GGCTGAGCGATTATGTATTGCTCGTGGAGGAACTCTGGCAACAATTCTTT
CTCAAGAAGAAGACAACTTTATGCTTGATCAACTGACCAAAAGGTTTGTT
TTTCTGTTAAAGTAGACTAGTAGACTGTTAATTAATCATGTCAGTGGATG
GAAATTTAAGTGCGTGTAGTATTCAGGGCCCAAGCAACGGGGGGCGGGGG
TGCATTACTTTTTTCAAACAAAATTCTATTTTTAAAATATTACGGTATAT
ACTTTCAATAGCCACGTTTCTGGGCAAGGTCAAGCTGAAATAGTGTCATT
TCAAGGCATATTAGAAAAATGCAAAATTTTCTCCCGTCCTTTGCAAACCC
GTTGCGCCTAATTAGTCACCATATTTTTTGCTCATCCACTTTCAAGATTA
TAACGTTGGCACTGCAGATGTTTGCTAAAATACGATTGGGGTTGGAGAGC
GGAAAATGTTGGTGAGAGGGTGCTGGTCAACCTCACCTGCTAACAAATTT
ACTACTTTCGCTTTATTAACTCGTACGCTCACTTTTTATTAGTGACATCT
TTCCAAACTGGCGTACCAGTCTATAATCAAAAGTGTAACACTCAGATTTC
TAAGGGTATGTCAACTTTTCTTTCTTACCTTTTTTAGGAAACCATCAAAT
GAAAGAACAATTAGTTATTGGTTAGATGGCGTTAAGAGGAATATGAAATA
TGTTTGGAATGATGGATCAGAGATGATTTATAAAAATCTTGGTGGTGGCA
GAGCAGATGAAAGTAGTTACACTGAAGGATGTGTTTTAGTCATGTATGGA
CCGGGTTTTCTTGTTCCCGAGCCTTACTCTTGGTTGAAAGTTTCTTGTAC
GAATGATGGATACCCAATACAATACGTTTGCAAAGGAAAAAATCTCAATG
GTTAGTAATGGAACAATCCTAATTATATGTCCCAATATTTTTATTTTCTA
TCTAGTTATATACCCAGTTACATCAGGCTCCCAATTTGTGCAACTGTGTT
AGCAAAATAGTTCTGGCGGCCATCCTAGACTAAGCCCTAACGGGTTGGTA
CGGGTTGTCCCGGGCGAAGTTATTCTATCTACTTTTCAATTGAAACTCAA
AACATATGATCTCCCAAATTAATAATTGGTTGTGGCCGATACGAACAAAC
TACATAATACTTTTCTGACCAACAACTTTTTTTGATCTAGTAGTAGCCGC
AACAGGAAGGTAGATTATCCAGTTTAATATAAAACTGTATTTGATGCCTC
TGTGCTTGATGCTTATCCAAGTAACAAAGAGAAGATCCAAGGGTCACTGG
GGGAAAATCCAGGGAAAGAAGTGGCCTTTTCCCCTACATTTGGGTCGACA
GCTAGAGGAAAGGGAGTCTCCGGTTTGCGTTCGACTGCAATTGAAAACTA
ATTCTGTTTGATATTTCATTAGATTCGCCTACAATTACGACAACAACCAC
GGTCGCACCAACCACACCATCAGAATCTTTGCCATCCTTGGTGACTTGGG
GAGCAAGTAAGTAAAAGACATTTTTATCAGGAAGAGACAAAACTTACCTA
CCTTCCTTTATACATATGCTTGATTTGAATTGAACTTCTAATTTCAATTT
AATTTCTTTTGTGTCATTTTAGTGCAATATTTCTTCAGCGATGAAAAACT
GAACTGGTCAGAATCGCAACAAAAATGTACTGATCTTGGAGGAACCCTTG
CAACAATCTTCTCACAAGACGAAGACGATTTTATTCGTGGCCAGTTGCGC
GATAGGTCTGTATAACCTTAATATGTTGCAAGGGAGAGGGTACTCTTGCA
AAATTAGGCTCTTGGTATTTGTGGATCTTCACTATTGCTAGAGGATAGAG
AAAAAAAATAGAAAATAGTCTTACAAAGAATTGATGTTTCACTGTTTTTG
TCTCTCTAAAGGGTCACTTTTTCGTAAATTATTTTACATGTGACTTATGA
CCAGTATAAAATTTCATACTATACACAAATTTACAATAGAAAATCACCAT
CTGACCGTTCTATCAACTACTGGCTTGATGGTGTCAAAAAGGATATGAAA
TATGTATGGAACGATGGCCTTGAGATGATTTACACCAATTTAAGATCAGG
AAGAACAAACGAAAACAGCTTTAAAGAAGGATGTGTTTCTGTTGGTTATT
CACCGACCGGTACCATCCCTGTATACTCTTGGTGGACCAATGATTGTGCA
GATAAAAGATTCCCATATCAATACATTTGTAAAGGAGAAGATTTAGGTAG
GCAAATTTATGTCAATAATAGTGAAAAAATATCTGCATAATAGACCTTAA
ATGTATTAATTTTGGTGTGTCCTTGATTTGGCGGTTGGTCAAATTGCGAT
TTTTGGCGGATGGGTTGATTTTAGACATCAAGAGCTACTTGATATTTTAA
CAGCTTTTACTCTAAAATGCTAATTTCATATAGATCCTTAAAAGTTTTTG
TTAATTTGGGCGGGTACTGTATTTAATTTGGCGGATTTTACCCAAAACAA
CCATATCCGCCAAAATTAATACACTTAGGCAGGTCTTTTCTAAATTATTT
TAGTGCAACTGCCTCGATCTGAAACAACTAAAGTGATTGAATCCTTTGTA
AAAGCAAGTGTATCTCTGTAAATACACCTACTCGACTGTAGCCACCAATT
ACCGTCCAAGTCTATTTTTCCCACCTATAGACGATAGAAAAAGGTGTAAA
AAAAGGATTGGATCGAGTTTAGGGGGATAATTAAATAATAAAGTGGCACG
CGCCTGACTGCGCGACTACGGTTAAAAGGTGTATAGAGTAAACTTCTTAT
GAACTCTTGTGGGAAGCAATTACCTTATTTCATATCTTTTTCTACTCCCT
AAGGGTCGAGTTTTGGTTTCTGGCTCACTCGTACCTGAGAGCCTAACCTG
ACGACGTATTGTCATAATTCTCTTACGTGTACGGTAAACCTTTGGGAGCT
TCACCGTGGTGTGCAGAAACAATGACTATCTGATCTCAGGTTAGCCTCAT
CTAAACGATAAAGCTATTTATGTTTTTTTATTTCTATCTTTATAGAAAAA
CCATCAAAAAGCGCTGTTTTGAAATTTTTGGAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027708XLOC_027708Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044055-exon-sc0004893-1575043694:3976..4033TCONS_00044055-exon-sc0004893-1575043694:3976..4033Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1575043694:1628..1711TCONS_00044055-exon-sc0004893-1575043694:1628..1711Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1575043694:1379..1511TCONS_00044055-exon-sc0004893-1575043694:1379..1511Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1575043694:888..1144TCONS_00044055-exon-sc0004893-1575043694:888..1144Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1575043694:47..88TCONS_00044055-exon-sc0004893-1575043694:47..88Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1510915933:3976..4033TCONS_00044055-exon-sc0004893-1510915933:3976..4033Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1510915933:1628..1711TCONS_00044055-exon-sc0004893-1510915933:1628..1711Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1510915933:1379..1511TCONS_00044055-exon-sc0004893-1510915933:1379..1511Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1510915933:888..1144TCONS_00044055-exon-sc0004893-1510915933:888..1144Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1510915933:47..88TCONS_00044055-exon-sc0004893-1510915933:47..88Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1491911889:3976..4033TCONS_00044055-exon-sc0004893-1491911889:3976..4033Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1491911889:1628..1711TCONS_00044055-exon-sc0004893-1491911889:1628..1711Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1491911889:1379..1511TCONS_00044055-exon-sc0004893-1491911889:1379..1511Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1491911889:888..1144TCONS_00044055-exon-sc0004893-1491911889:888..1144Clytia hemisphaericaexon
TCONS_00044055-exon-sc0004893-1491911889:47..88TCONS_00044055-exon-sc0004893-1491911889:47..88Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004893supercontigsc0004893:47..4033 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.751	1.35066	0.416484	0	0.131079	0.20716	0.57595	0.968475	0.689267	2.31132	1.39936	0.560878	0.389999	1.48338	0.95147	0.476383	1.3169	0.468762	8.91502	3.83724	0.396187	0.547257	1.03847	1.44167	0.420358	0.437756	0.246381	0.14224	0.273434	0.520333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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