TCONS_00044046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044046
Unique NameTCONS_00044046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044046 ID=TCONS_00044046|Name=TCONS_00044046|organism=Clytia hemisphaerica|type=transcript|length=492bp
CCGCCAGAACACTGGATAAAATGACGACCAtcacatattatttttttatt
gttcacacatctggacgcagattgtgttttgtGACCTTCGCGCatgcttt
gggcttttttggttggaaGCACCCACCTGTTCATAATAGGTAACAAACAT
CCATGTTAGAGAATGGGTGGACCCACCCACTTGAAACACTAATTATAATG
ATTGGTGATGAAATTATGGTAAAAATTTTACCATAATTTCATCACCAATC
ATTAGTCAAATAAATTACTTTGATGCTGTTAAAAGACAATACAGATCCAC
AAGTCCATTATTTTAAAGTTTATAATGNNNNNNNNNNNNNTTCATCACCA
ATCATTAGTCAAATAAATTACTTTGATGCTGTTAAAAGACAATACAGATC
CACAAGTCCATTATTTTAAAGTTTataatgtcaattttttttctcgacat
TTTCTgtctgatttttacttttttgcttattttatatcaaaa
Run BLAST on NCBI

transcript from alignment at sc0004878:4865..5356

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044046 ID=TCONS_00044046|Name=TCONS_00044046|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0004878:4865..5356 (Clytia hemisphaerica)
ttttgatataaaataagcaaaaaagtaaaaatcagacAGAAAatgtcgag
aaaaaaaattgacattatAAACTTTAAAATAATGGACTTGTGGATCTGTA
TTGTCTTTTAACAGCATCAAAGTAATTTATTTGACTAATGATTGGTGATG
AANNNNNNNNNNNNNCATTATAAACTTTAAAATAATGGACTTGTGGATCT
GTATTGTCTTTTAACAGCATCAAAGTAATTTATTTGACTAATGATTGGTG
ATGAAATTATGGTAAAATTTTTACCATAATTTCATCACCAATCATTATAA
TTAGTGTTTCAAGTGGGTGGGTCCACCCATTCTCTAACATGGATGTTTGT
TACCTATTATGAACAGGTGGGTGCttccaaccaaaaaagcccaaagcatG
CGCGAAGGTCacaaaacacaatctgcgtccagatgtgtgaacaataaaaa
aataatatgtgaTGGTCGTCATTTTATCCAGTGTTCTGGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027699XLOC_027699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044046-exon-sc0004878-1491911889:4865..5356TCONS_00044046-exon-sc0004878-1491911889:4865..5356Clytia hemisphaericaexon
TCONS_00044046-exon-sc0004878-1510915933:4865..5356TCONS_00044046-exon-sc0004878-1510915933:4865..5356Clytia hemisphaericaexon
TCONS_00044046-exon-sc0004878-1575043694:4865..5356TCONS_00044046-exon-sc0004878-1575043694:4865..5356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004878supercontigsc0004878:4865..5356 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.431414	0	0.453394	0.434261	0	0.178687	0	0.354923	0.326485	0	0	0.103285	0.253307	1.69128	0.1109	0.121117	0.547846	0.317927	1.08787	0.201935	0.526406	0.784715	0	0	0	0.36428	0.609256	0.757988	0.461601	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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