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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044025 ID=TCONS_00044025|Name=TCONS_00044025|organism=Clytia hemisphaerica|type=transcript|length=1045bp
GCTAATCAAAATAAATGTAAATCGATCAACTTCAACGCGAAACTTAAAAT
TTGTGAGTTACTTGGAGATAATGTTCATTCAACACACAATAAACTCAGCT
TGAAAACTGAGAAGGACTGGGTGTATTATGGACCAAAACAACAAAAGGAG
GTTTATACAGGATGTGATCAATTCAAAGATATTGATGGACGAGAATACTG
TTGTCCTACAGGAACCCATGGATCACGTTGTCAATTTCAACGAACTACGA
CCACTACACCAACAACGACAACGACACCGACAACGACAACGGCAACCACG
GCACAAGCAAGAGGTTGTGTTGGAGTTGCTCCATTTGACACTGATGCTCA
AGCTTCGTCATGCATGAGTACTTGTTTTCACATTCCTCCACACTGTCCAC
CCTCTCATTGTCAATGCTGGGGAGAGTGATAGCATCCTGAGCTTGGTCGT
TGAactttatgtttttattttgagaaaaagacaTTTTAAACGATGTAATC
ACATAATCACTGAACCATGAAGTCaaggaaaaggaaaaacatcaaaatca
aaaaacagaTCACCAAACATTTATGCGGAGATAATGGCGTTTGAGGcgta
aaaaatctatttttcaaataaaggCTTCGGGACACGAGAAGtgtttttcg
cgttggtgcaatgcaacatgctccatcccaccaacacaagaaaaaaagtg
tttgtcccatggtttctttttttgttgcatGGTACacaaagtgagggaaa
tacccaaaagacacgctaaTTTTGTCCCTGgaacaatggagcaaaattga
ttcgaatgaAAAACTTCtggtgtccccaagccttaaaattCCTGCTATTC
GGTAAATTTTGTACTATTGTCCACTTCAAAAAATTGAGCCCCCACAAAAT
CGAAGTCGCTGCACGCTTGCTAGGGTAGGCctgtagatttagaacgccat
ggtggaattaaataaacagaaaaagaacaataaaacaagagactttttca
gtttgaaaattgtgtaatactctcgggtacctaatagccgtcccc Run BLAST on NCBI protein sequence of TCONS_00044025-protein >TCONS_00044025-protein ID=TCONS_00044025-protein|Name=TCONS_00044025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
ANQNKCKSINFNAKLKICELLGDNVHSTHNKLSLKTEKDWVYYGPKQQKE
VYTGCDQFKDIDGREYCCPTGTHGSRCQFQRTTTTTPTTTTTPTTTTATT
AQARGCVGVAPFDTDAQASSCMSTCFHIPPHCPPSHCQCWGE Run BLAST on NCBI transcript from alignment at sc0004862:2812..5387+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044025 ID=TCONS_00044025|Name=TCONS_00044025|organism=Clytia hemisphaerica|type=transcript|length=2576bp|location=Sequence derived from alignment at sc0004862:2812..5387+ (Clytia hemisphaerica)
GCTAATCAAAATAAATGTAAATCGATCAACTTCAACGCGAAACTTAAAAT
TTGTGAGTTACTTGGAGATAATGTTCATTCAACACACAATAAACTCAGCT
TGAAAACTGAGAAGGACTGGGTGTATTATGGACCAAAACAACAAAAGGAG
GTAATCAATTATCTTTCGACGCTGCAGTACTTTAAATTTAATATACGCAT
TGAATTTACGGTTCTGTTCTTTTTACATGGGCTcatcagtagcgtagaca
gggggGGGGCGCAAAacttgtgtaggagagcagatttttttgatacagta
attatctttttacattAAAAATCTGCTCTCATGCACAAATTTTGCGCTCC
TCTGTGCTGTCTACATTACTGCTCGTATtctagcgaaaagagtttctATA
TAGGAAGTAcctatatctatagaggtctgcgattcagactactttTTACA
GTActtaaaattcaagaaaaatctaTTTACACACCCTCATCTCACAGACC
CGGCTGGATTTGATTAGCCAGTGGGTGTAAAAATAACAGAAAAGTTTTTA
TGGCAGGGgatttgattttaattgttttctagccagaaaattcatctggg
atggaaaaaaaaacataataattcGTGAGAATTTGCTTATCtggttattt
tcagtggggacaaaaattatagacgatatttttgccaatttttccagtgg
gaagggttcccaatgggtctgtgagaaaggagGTGTATTTACATTTTCTT
CCAAAGGTTTATACAGGATGTGATCAATTCAAAGATATTGATGGACGAGA
ATACTGTTGTCCTACAGGAACCCATGGATCACGTTGTCAATTTCAACGTA
AGTTTTCACTTGAACATAgattcattgggcttttccagaaagaaattgaa
tatgggggtcagaggatataacattttttggaaatttaccccccccctct
cagacattgtgacttttgacccccctcagacagcaggtctaacccgtcgg
acaagcattagttgatCGATCAAAATTctcctcaaacagagcaaaatcac
cccaaacagagcaagtttaccccctggacaaagtAAATTTTGTAGATCTT
TCACTACCcctggacactatatcctccgcccccatgtacggacattttct
ggaagagtccaTTCATTCAAAATGAGCCTAAATAGTCTAAGCATGAGTAA
TTATGATCGTTAAAATCGTTGTATTCCGTTTAATGATGATGGCTGGCTGC
TCTTTTGCAGAGGACACCCGGTTCCGTATTGAGCGGTCTAGGAGTCGTCT
CATTAGAATCGTCTACGCGATGGTTTATACTGCAACCAGCTTGCGAGACA
CTGACACACAGCTTTTGGATCGAGTGCGTTAAGTCCAGCGTGAACCACTA
GGGAACAAGGCTAGCGCACTCTCACCTCATCCACGATGGATTGTGGAATC
GATACCTAGCACAGTCACCAGACTGTGGCCTATTGAGTTATtgtctaccc
aattcccctcacatggcatgggttggcccgggcgaaggtacattcacttg
ccaagtgaatcacagcaccgagtgggaatcgaaccccgaccTCCTGGACG
GCAGTCAGGATCGATAACCACTACTGCGCCTTTTTTAAATTACTAGTATT
TTTCTCGAATTTCATCGTCTGGTTtccaacattgaaaaaattctgaaaag
taTTTTAAAAGCGTCTATGAGTGTTGCAATGATTTACCTATAAACACTTG
TCATTTATTTATTCTCATTTAGGAACTACGACCACTACACCAACAACGAC
AACGACACCGACAACGACAACGGCAACCACGGCACAAGCAAGAGGTTGTG
TTGGAGTTGCTCCATTTGACACTGATGCTCAAGCTTCGTCATGCATGAGT
ACTTGTTTTCACATTCCTCCACACTGTCCACCCTCTCATTGTCAATGCTG
GGGAGAGTGATAGCATCCTGAGCTTGGTCGTTGAactttatgtttttatt
ttgagaaaaagacaTTTTAAACGATGTAATCACATAATCACTGAACCATG
AAGTCaaggaaaaggaaaaacatcaaaatcaaaaaacagaTCACCAAACA
TTTATGCGGAGATAATGGCGTTTGAGGcgtaaaaaatctatttttcaaat
aaaggCTTCGGGACACGAGAAGtgtttttcgcgttggtgcaatgcaacat
gctccatcccaccaacacaagaaaaaaagtgtttgtcccatggtttcttt
ttttgttgcatGGTACacaaagtgagggaaatacccaaaagacacgctaa
TTTTGTCCCTGgaacaatggagcaaaattgattcgaatgaAAAACTTCtg
gtgtccccaagccttaaaattCCTGCTATTCGGTAAATTTTGTACTATTG
TCCACTTCAAAAAATTGAGCCCCCACAAAATCGAAGTCGCTGCACGCTTG
CTAGGGTAGGCctgtagatttagaacgccatggtggaattaaataaacag
aaaaagaacaataaaacaagagactttttcagtttgaaaattgtgtaata
ctctcgggtacctaatagccgtcccc Coding sequence (CDS) from alignment at sc0004862:2812..5387+ >TCONS_00044025 ID=TCONS_00044025|Name=TCONS_00044025|organism=Clytia hemisphaerica|type=CDS|length=1287bp|location=Sequence derived from alignment at sc0004862:2812..5387+ (Clytia hemisphaerica)
GCTAATCAAAATAAATGTAAATCGATCAACTTCAACGCGAAACTTAAAAT
TTGTGAGTTACTTGGAGATAATGTTCATTCAACACACAATAAACTCAGCT
TGAAAACTGAGAAGGACTGGGTGTATTATGGACCAAAACAACAAAAGGAG
GTTTATACAGGATGTGATCAATTCAAAGATATTGATGGACGAGAATACTG
TTGTCCTACAGGAACCCATGGATCACGTTGTCAATTTCAACGAACTACGA
CCACTACACCAACAACGACAACGACACCGACAACGACAACGGCAACCACG
GCACAAGCAAGAGGTTGTGTTGGAGTTGCTCCATTTGACACTGATGCTCA
AGCTTCGTCATGCATGAGTACTTGTTTTCACATTCCTCCACACTGTCCAC
CCTCTCATTGTCAATGCTGGGGAGAGTGAGCTAATCAAAATAAATGTAAA
TCGATCAACTTCAACGCGAAACTTAAAATTTGTGAGTTACTTGGAGATAA
TGTTCATTCAACACACAATAAACTCAGCTTGAAAACTGAGAAGGACTGGG
TGTATTATGGACCAAAACAACAAAAGGAGGTTTATACAGGATGTGATCAA
TTCAAAGATATTGATGGACGAGAATACTGTTGTCCTACAGGAACCCATGG
ATCACGTTGTCAATTTCAACGAACTACGACCACTACACCAACAACGACAA
CGACACCGACAACGACAACGGCAACCACGGCACAAGCAAGAGGTTGTGTT
GGAGTTGCTCCATTTGACACTGATGCTCAAGCTTCGTCATGCATGAGTAC
TTGTTTTCACATTCCTCCACACTGTCCACCCTCTCATTGTCAATGCTGGG
GAGAGTGAGCTAATCAAAATAAATGTAAATCGATCAACTTCAACGCGAAA
CTTAAAATTTGTGAGTTACTTGGAGATAATGTTCATTCAACACACAATAA
ACTCAGCTTGAAAACTGAGAAGGACTGGGTGTATTATGGACCAAAACAAC
AAAAGGAGGTTTATACAGGATGTGATCAATTCAAAGATATTGATGGACGA
GAATACTGTTGTCCTACAGGAACCCATGGATCACGTTGTCAATTTCAACG
AACTACGACCACTACACCAACAACGACAACGACACCGACAACGACAACGG
CAACCACGGCACAAGCAAGAGGTTGTGTTGGAGTTGCTCCATTTGACACT
GATGCTCAAGCTTCGTCATGCATGAGTACTTGTTTTCACATTCCTCCACA
CTGTCCACCCTCTCATTGTCAATGCTGGGGAGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044025-exon-sc0004862-1491911889:2812..2961 | TCONS_00044025-exon-sc0004862-1491911889:2812..2961 | Clytia hemisphaerica | exon |
| TCONS_00044025-exon-sc0004862-1510915933:2812..2961 | TCONS_00044025-exon-sc0004862-1510915933:2812..2961 | Clytia hemisphaerica | exon |
| TCONS_00044025-exon-sc0004862-1575043694:2812..2961 | TCONS_00044025-exon-sc0004862-1575043694:2812..2961 | Clytia hemisphaerica | exon |
| TCONS_00044025-exon-sc0004862-1491911889:3568..3658 | TCONS_00044025-exon-sc0004862-1491911889:3568..3658 | Clytia hemisphaerica | exon |
| TCONS_00044025-exon-sc0004862-1510915933:3568..3658 | TCONS_00044025-exon-sc0004862-1510915933:3568..3658 | Clytia hemisphaerica | exon |
| TCONS_00044025-exon-sc0004862-1575043694:3568..3658 | TCONS_00044025-exon-sc0004862-1575043694:3568..3658 | Clytia hemisphaerica | exon |
| TCONS_00044025-exon-sc0004862-1491911889:4584..5387 | TCONS_00044025-exon-sc0004862-1491911889:4584..5387 | Clytia hemisphaerica | exon |
| TCONS_00044025-exon-sc0004862-1510915933:4584..5387 | TCONS_00044025-exon-sc0004862-1510915933:4584..5387 | Clytia hemisphaerica | exon |
| TCONS_00044025-exon-sc0004862-1575043694:4584..5387 | TCONS_00044025-exon-sc0004862-1575043694:4584..5387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004862 | supercontig | sc0004862:2812..5387 + |
Blast
The following BLAST results are available for this feature:
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