TCONS_00044020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044020
Unique NameTCONS_00044020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044020 ID=TCONS_00044020|Name=TCONS_00044020|organism=Clytia hemisphaerica|type=transcript|length=503bp
CTGAAGAATCActtcataaaaataaaaatttcactaCAGAAAAATTATCA
ATCCGTCACACACAACTTCACTTTTTACTAGAGAGAAAATATACAACAAC
GACACAACttcaaaaaatctaaaagaGCATAATAAACAATGCTCcattta
tttgattcttttgtttttagaaatcTTGTTTAAAAAAGTTCAAGCTTGTT
CAAGAAACTGTTCaagcttcaaaaattcaaaaaatgattttaaatttttt
tggactGTGCAAAAAATAGTTTATCTTTATTGTTCAAGAATATTCAAGTC
ATGTTCAAGCTTTATAAATCCTTTCCCAGCTGGTTCAGGAAAATTCAACC
TTCTCTTTTTTCAATGAAAGACTGTTCAACAATGTTCAAGATTTGTTCAA
GATGCTCAAATCTTCAAATTCAACTAAGATTGAACACATAGCTTGAATGA
GCTGGTAATTCTAGAATCGTTCAAGCTGTTCAAGGTTTGGTTCAAGATAC
CAA
Run BLAST on NCBI

transcript from alignment at sc0004855:568..1070

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044020 ID=TCONS_00044020|Name=TCONS_00044020|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at sc0004855:568..1070 (Clytia hemisphaerica)
TTGGTATCTTGAACCAAACCTTGAACAGCTTGAACGATTCTAGAATTACC
AGCTCATTCAAGCTATGTGTTCAATCTTAGTTGAATTTGAAGATTTGAGC
ATCTTGAACAAATCTTGAACATTGTTGAACAGTCTTTCATTGAAAAAAGA
GAAGGTTGAATTTTCCTGAACCAGCTGGGAAAGGATTTATAAAGCTTGAA
CATGACTTGAATATTCTTGAACAATAAAGATAAACTATTTTTTGCACagt
ccaaaaaaatttaaaatcattttttgaatttttgaagcttGAACAGTTTC
TTGAACAAGCTTGAACTTTTTTAAACAAgatttctaaaaacaaaagaatc
aaataaatgGAGCATTGTTTATTATGCtcttttagattttttgaaGTTGT
GTCGTTGTTGTATATTTTCTCTCTAGTAAAAAGTGAAGTTGTGTGTGACG
GATTGATAATTTTTCTGtagtgaaatttttatttttatgaagTGATTCTT
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027676XLOC_027676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044020-exon-sc0004855-1491911889:568..1070TCONS_00044020-exon-sc0004855-1491911889:568..1070Clytia hemisphaericaexon
TCONS_00044020-exon-sc0004855-1510915933:568..1070TCONS_00044020-exon-sc0004855-1510915933:568..1070Clytia hemisphaericaexon
TCONS_00044020-exon-sc0004855-1575043694:568..1070TCONS_00044020-exon-sc0004855-1575043694:568..1070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004855supercontigsc0004855:568..1070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120673	0.23535	0	0.401018	0	0.128594	0	0.145244	0.711819	0.251915	0.366773	0.562571	0.160511	0.333385	0.137044	0.808879	0	0.371401	0.256555	0.134233	0.933385	0.682909	0.138361	0.37737	0	0.46252	0.82733	0.35318	0.267874	0.682304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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