TCONS_00044017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044017
Unique NameTCONS_00044017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044017 ID=TCONS_00044017|Name=TCONS_00044017|organism=Clytia hemisphaerica|type=transcript|length=451bp
CTTCAAACTTTTGCTCAACGTACTCTATGGTGTGGAAACCCGGATCTTCA
TTGAGATTTTTCCTTAGGTTCGCCAGTTCTTTCTTTTGGGATGCAATAAT
AACTCTATCGACTTCGTTTTGCTTGAGAAGCCCCTTACAGGCTTCTAGCT
CTCTTCGTAGGTTTTCGACTTCATGTTCAAGTTTAAGAAATGATTGGGCT
CGTCTTGTAAGGACGAGGGCTGAGAGTACAGGTTTAACTTCTACACAATT
TTGGCAGGTGTACCTGTAATGAGTGTTTTTCGACTTGTCAATGAATTGCT
GTATCTGGTACGCGGGAAGCATCGTACATCTATAGTGAACACTCCTCTTG
CACTTGACACAGGTCAAGCGGTCCTCGTCTTTATCAACGATATCGTCGGT
GCATTGTTTTAGTGTGCAAACCAGCAATCGGCCACCACCTTCTTCTGGCC
T
Run BLAST on NCBI

protein sequence of TCONS_00044017-protein

>TCONS_00044017-protein ID=TCONS_00044017-protein|Name=TCONS_00044017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
RPEEGGGRLLVCTLKQCTDDIVDKDEDRLTCVKCKRSVHYRCTMLPAYQI
QQFIDKSKNTHYRYTCQNCVEVKPVLSALVLTRRAQSFLKLEHEVENLRR
ELEACKGLLKQNEVDRVIIASQKKELANLRKNLNEDPGFHTIEYVEQKFE
Run BLAST on NCBI

transcript from alignment at sc0004850:1976..2426

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044017 ID=TCONS_00044017|Name=TCONS_00044017|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0004850:1976..2426 (Clytia hemisphaerica)
AGGCCAGAAGAAGGTGGTGGCCGATTGCTGGTTTGCACACTAAAACAATG
CACCGACGATATCGTTGATAAAGACGAGGACCGCTTGACCTGTGTCAAGT
GCAAGAGGAGTGTTCACTATAGATGTACGATGCTTCCCGCGTACCAGATA
CAGCAATTCATTGACAAGTCGAAAAACACTCATTACAGGTACACCTGCCA
AAATTGTGTAGAAGTTAAACCTGTACTCTCAGCCCTCGTCCTTACAAGAC
GAGCCCAATCATTTCTTAAACTTGAACATGAAGTCGAAAACCTACGAAGA
GAGCTAGAAGCCTGTAAGGGGCTTCTCAAGCAAAACGAAGTCGATAGAGT
TATTATTGCATCCCAAAAGAAAGAACTGGCGAACCTAAGGAAAAATCTCA
ATGAAGATCCGGGTTTCCACACCATAGAGTACGTTGAGCAAAAGTTTGAA
G

Coding sequence (CDS) from alignment at sc0004850:1976..2426

>TCONS_00044017 ID=TCONS_00044017|Name=TCONS_00044017|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0004850:1976..2426 (Clytia hemisphaerica)
AGGCCAGAAGAAGGTGGTGGCCGATTGCTGGTTTGCACACTAAAACAATG
CACCGACGATATCGTTGATAAAGACGAGGACCGCTTGACCTGTGTCAAGT
GCAAGAGGAGTGTTCACTATAGATGTACGATGCTTCCCGCGTACCAGATA
CAGCAATTCATTGACAAGTCGAAAAACACTCATTACAGGTACACCTGCCA
AAATTGTGTAGAAGTTAAACCTGTACTCTCAGCCCTCGTCCTTACAAGAC
GAGCCCAATCATTTCTTAAACTTGAACATGAAGTCGAAAACCTACGAAGA
GAGCTAGAAGCCTGTAAGGGGCTTCTCAAGCAAAACGAAGTCGATAGAGT
TATTATTGCATCCCAAAAGAAAGAACTGGCGAACCTAAGGAAAAATCTCA
ATGAAGATCCGGGTTTCCACACCATAGAGTACGTTGAGCAAAAGTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027673XLOC_027673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044017-exon-sc0004850-1491911889:1976..2426TCONS_00044017-exon-sc0004850-1491911889:1976..2426Clytia hemisphaericaexon
TCONS_00044017-exon-sc0004850-1510915933:1976..2426TCONS_00044017-exon-sc0004850-1510915933:1976..2426Clytia hemisphaericaexon
TCONS_00044017-exon-sc0004850-1575043694:1976..2426TCONS_00044017-exon-sc0004850-1575043694:1976..2426Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044017-proteinTCONS_00044017-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004850supercontigsc0004850:1976..2426 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.146602	1.57256	3.31981	1.78635	0.988507	1.40604	0.376961	0.529359	0.741233	0.918137	0.445583	1.46454	1.36501	0.708787	0.665965	0.536012	1.21059	1.12802	0.779207	0.48923	0.42523	0.414825	0	0.305639	0.944402	1.54524	0.201021	0	0.325434	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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