TCONS_00044013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044013
Unique NameTCONS_00044013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044013 ID=TCONS_00044013|Name=TCONS_00044013|organism=Clytia hemisphaerica|type=transcript|length=1215bp
ggaccaccccgtttattaatttttaagaatattttcagttggcaaaaaga
agtccccttattttgctccaaaatgcctgattttagcctatatttacccc
atttttgggttttcagaagtacaattgccaacccccccggcaattaggtc
cccccgtttattaaaatttcgaaaattttccagccaccccgtttattcga
acccccccgtttatttggcacctaagagtatataCATTTAAATCATTTTA
TCTGGATGGTCTTATTATCAAATGTGTATGCCAATCACAACTTGATTGAA
TAACAAAAAGTTATACGTATGAATTGGTAATACCCGGGTTGAAAAATTAT
ATcggtgcagtcaaaacatgtgattactcgaaaaagttcacatGGTTTTA
TCTCCATATGTTACCTACATATTGTACTTTACAACTTACAGTTAAttact
ttattagtgtcaataaatttgaaccaatcagaaataaaagtCATGTAACa
aggacataaaaatttcgagtactGTAAAAAGCATGACCTGTGTACATTAT
ATAGGTGTTGTTACTGAATCGAGTGTTCGCGCGAATGCGTGCGTGTGCAA
TGGAAAATGGTGATCACTCAGGAATTTGTTCGAATGCAATGCAGCTGAAA
GATTCAGTGCAAGAAGAAGAAAGAGATCTATTGTTCAATCCTAATAACTT
CAAATGTCGGCAACAGGTCTCTTTTCCAATATGGGCTCGTAAAGTTTGCA
AGTCGAAACCCGAGCACCGAACACCGGAACAGCTTCACAATATAGTCAGT
ATCATGCGTCAACTCAAAGACTTCCGTAAATACTCAAAGAAGATGCAGTT
ATTGTTAGCTAAGATCGCTCGTTATGAAGGCTTTGGGAGAAGACGTGTTG
TGATTAGGAAAGGACATTTtggtgtttgtttttatttcgttttctCGGGA
AGTGTTGGCGTGGTAATCGATACTGACGAAGATAAAGCATTTGACAAAGA
CGGGCGGAGTGAGTTTACATCCTTTTTTTGTACTCTACTGATTTTTATTG
AGGACGAATAAGAAACTAGtgcatgatattcatgacgtaatgtttttatG
CGGAAACAGCCCGGTTTATGgggcgccaaagcggaaataaatactatctt
tttaaaacaatactatcttcgtttaaaacatactatctttgttgtaaaca
tactatcttcgttta
Run BLAST on NCBI

protein sequence of TCONS_00044013-protein

>TCONS_00044013-protein ID=TCONS_00044013-protein|Name=TCONS_00044013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MRACAMENGDHSGICSNAMQLKDSVQEEERDLLFNPNNFKCRQQVSFPIW
ARKVCKSKPEHRTPEQLHNIVSIMRQLKDFRKYSKKMQLLLAKIARYEGF
GRRRVVIRKGHFGVCFYFVFSGSVGVVIDTDEDKAFDKDGRSEFTSFFCT
LLIFIEDE
Run BLAST on NCBI

transcript from alignment at sc0004848:887..2951+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044013 ID=TCONS_00044013|Name=TCONS_00044013|organism=Clytia hemisphaerica|type=transcript|length=2065bp|location=Sequence derived from alignment at sc0004848:887..2951+ (Clytia hemisphaerica)
ggaccaccccgtttattaatttttaagaatattttcagttggcaaaaaga
agtccccttattttgctccaaaatgcctgattttagcctatatttacccc
atttttgggttttcagaagtacaattgccaacccccccggcaattaggtc
cccccgtttattaaaatttcgaaaattttccagccaccccgtttattcga
acccccccgtttatttggcacctaagagtatataCATTTAAATCATTTTA
TCTGGATGGTCTTATTATCAAATGTGTATGCCAATCACAACTTGATTGAA
TAACAAAAAGTTATACGTATGAATTGGTAATACCCGGGTTGAAAAATTAT
ATcggtgcagtcaaaacatgtgattactcgaaaaagttcacatGGTTTTA
TCTCCATATGTTACCTACATATTGTACTTTACAACTTACAGTTAAttact
ttattagtgtcaataaatttgaaccaatcagaaataaaagtCATGTAACa
aggacataaaaatttcgagtactGTAAAAAGCATGACCTGTGTACATTAT
ATAGGTGTTGTTACTGAATCGAGTGTTCGCGCGAATGCGTGCGTGTGCAA
TGGAAAATGGTGATCACTCAGGAATTTGTTCGAATGCAATGCAGCTGAAA
GATTCAGTGCAAGAAGAAGAAAGAGATCTATTGTTCAATCCTAATAACTT
CAAATGTCGGCAACAGGTATTGATTTCGTTTCCTTGAGtagaagtttttt
tataagaacatccaaagatttTTGAGCCTTAGGATGTTCNTGTTTCCTTG
Agtagaagttttttttataagaacatccaaagatttttaagccttaggat
gttcttaacattttgagttttaagcctaaaaatgttcttaacatgttctt
attttcaccattttgaaagcatttttgtccattttcgtTAGAAATTGtat
gcaaagccttaaaattttcttaacttgtccttaacattttggtcatccaA
GCCTAATGTTTttctatagtttgttctttatATGAAACTAACGTGTAGGA
GTTTAGCGGGAGCTGAGACCCTTTTCTTTGTGAGTATTAAAAATTGTGGA
TTTCCGTCTCAGGGAAAAGTATGTAAAGATGTTTTTTCCATTTCAAATTT
CTGTATAATTCACAAAGTTTCAAGAGtatgtgctaatttgctgtgtaaaa
tcgATTTTCCATTGTTGCTTTAACCACCACTTTTTGACTATGTTTGTATG
TTCTTCTCGCACACTTTTCAATATAAGAACATGCCTCGATGCTATTATAA
AAAGCCTAGGCTTTCAATCCCAAACATCACAACACTTCCAACAGATGCCT
GGATAAAAGGAGAGAGGAGTTGGAAAAGTTTCCAAATTTTAATTAAAGGG
AGGGGGTAATTGCCGTGGGTGAAATTGAGCTTAGTATTGATACCCAAAAA
AACTATAGACCGAAATCCGGCTTTTTAGAGCCAAATCAGAATCTCTgatt
tgacagctgaaaatattttcaaaaatcaatattcaaaaaacACCTTTTAC
TACTTTGTATCTCCAGGTCTCTTTTCCAATATGGGCTCGTAAAGTTTGCA
AGTCGAAACCCGAGCACCGAACACCGGAACAGCTTCACAATATAGTCAGT
ATCATGCGTCAACTCAAAGACTTCCGTAAATACTCAAAGAAGATGCAGTT
ATTGTTAGCTAAGATCGCTCGTTATGAAGGCTTTGGGAGAAGACGTGTTG
TGATTAGGAAAGGACATTTtggtgtttgtttttatttcgttttctCGGGA
AGTGTTGGCGTGGTAATCGATACTGACGAAGATAAAGCATTTGACAAAGA
CGGGCGGAGTGAGTTTACATCCTTTTTTTGTACTCTACTGATTTTTATTG
AGGACGAATAAGAAACTAGtgcatgatattcatgacgtaatgtttttatG
CGGAAACAGCCCGGTTTATGgggcgccaaagcggaaataaatactatctt
tttaaaacaatactatcttcgtttaaaacatactatctttgttgtaaaca
tactatcttcgttta

Coding sequence (CDS) from alignment at sc0004848:887..2951+

>TCONS_00044013 ID=TCONS_00044013|Name=TCONS_00044013|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0004848:887..2951+ (Clytia hemisphaerica)
ATGCGTGCGTGTGCAATGGAAAATGGTGATCACTCAGGAATTTGTTCGAA
TGCAATGCAGCTGAAAGATTCAGTGCAAGAAGAAGAAAGAGATCTATTGT
TCAATCCTAATAACTTCAAATGTCGGCAACAGGTCTCTTTTCCAATATGG
GCTCGTAAAGTTTGCAAGTCGAAACCCGAGCACCGAACACCGGAACAGCT
TCACAATATAGTCAGTATCATGCGTCAACTCAAAGACTTCCGTAAATACT
CAAAGAAGATGCAGTTATTGTTAGCTAAGATCGCTCGTTATGAAGGCTTT
GGGAGAAGACGTGTTGTGATTAGGAAAGGACATTTtggtgtttgttttta
tttcgttttctCGGGAAGTGTTGGCGTGGTAATCGATACTGACGAAGATA
AAGCATTTGACAAAGACGGGCGGAGTGAGTTTACATCCTTTTTTTGTACT
CTACTGATTTTTATTGAGGACGAATAAATGCGTGCGTGTGCAATGGAAAA
TGGTGATCACTCAGGAATTTGTTCGAATGCAATGCAGCTGAAAGATTCAG
TGCAAGAAGAAGAAAGAGATCTATTGTTCAATCCTAATAACTTCAAATGT
CGGCAACAGGTCTCTTTTCCAATATGGGCTCGTAAAGTTTGCAAGTCGAA
ACCCGAGCACCGAACACCGGAACAGCTTCACAATATAGTCAGTATCATGC
GTCAACTCAAAGACTTCCGTAAATACTCAAAGAAGATGCAGTTATTGTTA
GCTAAGATCGCTCGTTATGAAGGCTTTGGGAGAAGACGTGTTGTGATTAG
GAAAGGACATTTtggtgtttgtttttatttcgttttctCGGGAAGTGTTG
GCGTGGTAATCGATACTGACGAAGATAAAGCATTTGACAAAGACGGGCGG
AGTGAGTTTACATCCTTTTTTTGTACTCTACTGATTTTTATTGAGGACGA
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027669XLOC_027669Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044013-proteinTCONS_00044013-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044013-exon-sc0004848-1491911889:887..1602TCONS_00044013-exon-sc0004848-1491911889:887..1602Clytia hemisphaericaexon
TCONS_00044013-exon-sc0004848-1510915933:887..1602TCONS_00044013-exon-sc0004848-1510915933:887..1602Clytia hemisphaericaexon
TCONS_00044013-exon-sc0004848-1575043694:887..1602TCONS_00044013-exon-sc0004848-1575043694:887..1602Clytia hemisphaericaexon
TCONS_00044013-exon-sc0004848-1491911889:2453..2951TCONS_00044013-exon-sc0004848-1491911889:2453..2951Clytia hemisphaericaexon
TCONS_00044013-exon-sc0004848-1510915933:2453..2951TCONS_00044013-exon-sc0004848-1510915933:2453..2951Clytia hemisphaericaexon
TCONS_00044013-exon-sc0004848-1575043694:2453..2951TCONS_00044013-exon-sc0004848-1575043694:2453..2951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004848supercontigsc0004848:887..2951 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.369027	0.238564	0.525191	0.560582	1.00514	0.742871	1.84329	2.17412	1.61968	1.83672	1.16829	0.987703	1.29702	0.988186	0.2691	0.308162	5.17914	5.20983	5.69582	6.45873	7.94148	8.51416	4.98164	6.2437	42.3617	19.3836	17.9253	12.6705	0.876205	0.501711
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR000595cNMP-bd_dom
IPR018490cNMP-bd-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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