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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043983 ID=TCONS_00043983|Name=TCONS_00043983|organism=Clytia hemisphaerica|type=transcript|length=447bp
TAGGTATTCGTCCAACATTCTGGAAGAAATTTGACGCATCAGTACCATGG
TCAGCACGTGTTAATCAAGTCATTGATTGGATGAAATTACCGGTGAATGA
AAGCCGTCCGGAATTTATCACCTTATATTTCGAAGAGCCGGACAAAAAAG
GACACAAGTATGGACCTCACTCGCCccaagtaagtaagtttgcgaccgca
gtcggaggcgacccgaaggctcctctttcgatagctatctacccgaaggt
aggggagagcaccactctttctccctggattgttccacttacccttgatc
cttctcttaattgctgagcaccaagcagagaggcatcaagtaccattttg
gaaatctttggtatgaacCGGCTGGGAGTTCGACCCACAACCTTGTGCAC
CGTGCACAACCACTGCAATACGGTCGCCTCAGGTTCATATTTGATAC Run BLAST on NCBI protein sequence of TCONS_00043983-protein >TCONS_00043983-protein ID=TCONS_00043983-protein|Name=TCONS_00043983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
GIRPTFWKKFDASVPWSARVNQVIDWMKLPVNESRPEFITLYFEEPDKKG
HKYGPHSPQVSKFATAVGGDPKAPLSIAIYPKVGESTTLSPWIVPLTLDP
SLNC Run BLAST on NCBI transcript from alignment at sc0004807:726..2260- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043983 ID=TCONS_00043983|Name=TCONS_00043983|organism=Clytia hemisphaerica|type=transcript|length=1535bp|location=Sequence derived from alignment at sc0004807:726..2260- (Clytia hemisphaerica)
TAGGTATTCGTCCAACATTCTGGAAGAAATTTGACGCGTAAGTGTTGCTT
TTTTATCTCACAGGCATCTGCTTATCCTCTAACGAAAAGAGTATTAGTAC
TTTAAGTTTCCGTGACGGTCTTCTGAATAACTAATTACTTACACAGCAGT
TACCTAGAGACAAGATAATTTATCATGTTTTTACTGGCTGTGGGAAAGTA
ATGTATGTGGAGTAATTTGTTATTCAATCTGCCGTCGCGTTTTCCTGTGG
CATGGTGAGTACGCGTTATTCAAGTGGTTTCTTAGGTTCTCTAAGCTTTG
TATAGGAAGTATGGGTTAACAAAGTCATTTATTTTCGTATCTTTAATTCT
TCTAGATCAGTACCATGGTCAGCACGTGTTAATCAAGTCATTGATTGGAT
GAAATTACCGGTGAATGAAAGGTAACAAATGCTTATTCAGAACTTTGTGG
TAACAGGAAATTTTGAGTAAAATCGGATTAGCGGTTATGTTGAAAGTTAG
CATTTTAGGTAAAAAATGGACCGGTCTGTAAAAAATCAACCACGCATGTG
AGTACACTGAAATTTCGCATACTGTCACACCTGGTGAATATTTCAATTCA
AAAGCCTCAGTAGTTCCTGAGTTCTGGCAGGGGGTCGACGTTTATTTTAC
AGACCGGTACACTTTTCAGTCAAATTACGCCTTCTAGCTCTTCGGGCTTT
ATAAATCTATGCCAAAAACGATAAGATTTAAAGGGCCCACTTGAGGCCCC
TCCCAAGACGTTTCCCTTAGTAAAAAAATTGGAAGATACTCAAGGAGCTG
AGGTCAACTAATTTATGCGGGAATTTGTTTTGGGTAATTCGTCGAAATTT
GATACAAAAGTTTTTTCTCACCATTTTTGGGGATGAAAATGAATATAATG
AAGTTACGAACACTGAAAAAGTTTTATTGAAATATTTTTTGCTAAGATCT
CCAGAGGGATTATGAATCCAACCTAAATTCTAGGGTCATATCAAAGTGGA
TTAATTTTCGCAAATTTCGTTTGCTTCTGCGAAACTTAGTCGTCGCGGAA
AATTTGCAATTGTGACTTTTGCCATACGCCCAAGGAAAATGATGAAAGAA
ATTAGTCGAGAAAGAAGCTGATTTGCGAAATTTTTTCCATCCGAAAATTA
ATCCACTTTTATTCAAATTTACCTCATTATTTTCTATTTAGCCGTCCGGA
ATTTATCACCTTATATTTCGAAGAGCCGGACAAAAAAGGACACAAGTATG
GACCTCACTCGCCCCAAGTAAGTAAGTTTGCGACCGCAGTCGGAGGCGAC
CCGAAGGCTCCTCTTTCGATAGCTATCTACCCGAAGGTAGGGGAGAGCAC
CACTCTTTCTCCCTGGATTGTTCCACTTACCCTTGATCCTTCTCTTAATT
GCTGAGCACCAAGCAGAGAGGCATCAAGTACCATTTTGGAAATCTTTGGT
ATGAACCGGCTGGGAGTTCGACCCACAACCTTGTGCACCGTGCACAACCA
CTGCAATACGGTCGCCTCAGGTTCATATTTGATAC Coding sequence (CDS) from alignment at sc0004807:726..2260- >TCONS_00043983 ID=TCONS_00043983|Name=TCONS_00043983|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0004807:726..2260- (Clytia hemisphaerica)
CCGTCCGGAATTTATCACCTTATATTTCGAAGAGCCGGACAAAAAAGGAC
ACAAGTATGGACCTCACTCGCCCCAAGTAAGTAAGTTTGCGACCGCAGTC
GGAGGCGACCCGAAGGCTCCTCTTTCGATAGCTATCTACCCGAAGGTAGG
GGAGAGCACCACTCTTTCTCCCTGGATTGTTCCACTTACCCTTGATCCTT
CTCTTAATTGCTGAATCAGTACCATGGTCAGCACGTGTTAATCAAGTCAT
TGATTGGATGAAATTACCGGTGAATGAAAGGGTATTCGTCCAACATTCTG
GAAGAAATTTGACGCCCGTCCGGAATTTATCACCTTATATTTCGAAGAGC
CGGACAAAAAAGGACACAAGTATGGACCTCACTCGCCCCAAGTAAGTAAG
TTTGCGACCGCAGTCGGAGGCGACCCGAAGGCTCCTCTTTCGATAGCTAT
CTACCCGAAGGTAGGGGAGAGCACCACTCTTTCTCCCTGGATTGTTCCAC
TTACCCTTGATCCTTCTCTTAATTGCTGAATCAGTACCATGGTCAGCACG
TGTTAATCAAGTCATTGATTGGATGAAATTACCGGTGAATGAAAGGGTAT
TCGTCCAACATTCTGGAAGAAATTTGACGCCCGTCCGGAATTTATCACCT
TATATTTCGAAGAGCCGGACAAAAAAGGACACAAGTATGGACCTCACTCG
CCCCAAGTAAGTAAGTTTGCGACCGCAGTCGGAGGCGACCCGAAGGCTCC
TCTTTCGATAGCTATCTACCCGAAGGTAGGGGAGAGCACCACTCTTTCTC
CCTGGATTGTTCCACTTACCCTTGATCCTTCTCTTAATTGCTGAATCAGT
ACCATGGTCAGCACGTGTTAATCAAGTCATTGATTGGATGAAATTACCGG
TGAATGAAAGGGTATTCGTCCAACATTCTGGAAGAAATTTGACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043983-exon-sc0004807-1575043694:2224..2260 | TCONS_00043983-exon-sc0004807-1575043694:2224..2260 | Clytia hemisphaerica | exon |
| TCONS_00043983-exon-sc0004807-1575043694:1840..1905 | TCONS_00043983-exon-sc0004807-1575043694:1840..1905 | Clytia hemisphaerica | exon |
| TCONS_00043983-exon-sc0004807-1575043694:726..1069 | TCONS_00043983-exon-sc0004807-1575043694:726..1069 | Clytia hemisphaerica | exon |
| TCONS_00043983-exon-sc0004807-1510915933:2224..2260 | TCONS_00043983-exon-sc0004807-1510915933:2224..2260 | Clytia hemisphaerica | exon |
| TCONS_00043983-exon-sc0004807-1510915933:1840..1905 | TCONS_00043983-exon-sc0004807-1510915933:1840..1905 | Clytia hemisphaerica | exon |
| TCONS_00043983-exon-sc0004807-1510915933:726..1069 | TCONS_00043983-exon-sc0004807-1510915933:726..1069 | Clytia hemisphaerica | exon |
| TCONS_00043983-exon-sc0004807-1491911889:2224..2260 | TCONS_00043983-exon-sc0004807-1491911889:2224..2260 | Clytia hemisphaerica | exon |
| TCONS_00043983-exon-sc0004807-1491911889:1840..1905 | TCONS_00043983-exon-sc0004807-1491911889:1840..1905 | Clytia hemisphaerica | exon |
| TCONS_00043983-exon-sc0004807-1491911889:726..1069 | TCONS_00043983-exon-sc0004807-1491911889:726..1069 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004807 | supercontig | sc0004807:726..2260 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002591 | Phosphodiest/P_Trfase |
| IPR017849 | Alkaline_Pase-like_a/b/a |
| IPR017850 | Alkaline_phosphatase_core |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
The following BLAST results are available for this feature:
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