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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043977 ID=TCONS_00043977|Name=TCONS_00043977|organism=Clytia hemisphaerica|type=transcript|length=2233bp
AGTATTTGCAatccaaattttcaataattagtCCATAGAAAATATCTCCT
GATTTACAAATTATATGTTTTGTGtgcaaatttggctttttttcacATCC
GGTGGGTTTCCGgcttccaaaaaaataaaaatcaattttaaatgtTTGAG
TTTCATAAATGTCACATGATCATAccattcaaagtttaaaaaaataacaa
attaattttctttttccagcAGGAACAAATTACCAAACATTTCAAAGACC
AAGGTCAAGTCTGGATACATATGAACGTCGAAGAGACAGTTAAAGTGGAA
TAATCGAAATAGTGAATATTACAAGCGATAAGAACGATATCAAATGCTGT
CAAAAGCTGGTGGCTGAGACTCGAATCCATGCGACAAGTTGCAACGACGG
CTTTACGATGATAATGCTGAcaatctttaaattttaaatgcttcaaagtt
tgtaaaaaatagGATGAAACGATAACGATACATTTACTGCAATTACTTTT
AACGCATAAGCAGAATCAAATGTTGGTGGTTGTGATGAAATGTTTAAAGC
CATTCGATTTCTTTGTCAAGTaagactgaaaatgacaaatgATTAATGAT
AATTATTCTGAGCATCATCAAAAATTGGCTGCTTTAGGATGAGCGAGTTT
CGCATGACaatttgaaaatagaaatatataTCCAGCTGTAACTCTTCGCC
ATTTCAATAATTGTGTTATTAATCTTTGAAATATCAACCAGAATGCATAC
ATGTTTAGATGAATTAATTAACTAGCAAATGTACTCCCGTGTTTTTCCAT
ATTGTCTATTCTTAGTTTTGTGacaatctttttgatttttgagtagGTAA
ATGAATTACAAATaagaattcaagaaaataacaaaaaaattaacaaaaat
acctaaaaataaataatttttaattatgaaaaaaaattctaagaaaaaca
caagaaaaatgatttgatataaaaaaggaataaatactacaataaataaa
ataatacaaCAAATGCTataggggccgtccatatagtacgtacgcaaaga
ttttccaaaaatttgatacccctccccattgtacgcagagaacaatagaa
atgatgtcatttaaacaatagatgtacgctatTGCTAAACCCCCTTCTTC
CCCCTTCACTACTACGTACGTACTATATCGATGGCCCCATATCCGCAGGT
ACGTAAGTTTCCTGACGATAATGAAAACGAAAATGATGAAAGACGTTTCT
AAACTCCTTGTCCTTTCTCTATTGATTTTATTTCTACATGAGACCATCCA
TAGAAGACTTACACACACAATGAGTAACTAACTTTATCCATTGATGTCAT
TCAACGCAGATCTCTCCCGAGTTCATGCAAAAGAATTATGGATGTCTTTT
ACGAATGGTCCCAAAAGGTCAAAAAAATTACGTACGTATGGATAGGGGGT
GGTGGGACGACCTTAATTGCAAATTTCTAAATTGACAAACCTTAATAATC
CTTTGTTTATTATAAAATTCCACTTTATCCAAAATCCTATccacaaattt
tcattttttagacaGACCTGCTAAAGACTTCCAAGTTTAATTAAACTATA
AAATGAGACTCATATAATCACAAAATTAATAGGAGTGTATCTAATCATTG
ACTAACTTTTTGAAAGTCGCCAAAAAGAGAGGACTTTTCTTTCTTCCTGA
AATATGGACCTCTCATAATTAAATCATCGGAGAGTTAAGATCACCCCTTG
ACCACCCCCAGATCAACCCCCTCCCTTGTACCCGCCCTTGACTCTGGCGG
GCATGACTCAGCTAGCAGTCTCTGTTCTAGCAATCTCCGTTCTCGCATTT
GGCTGTAAGTGATAATTTGATGCCATCATGGTCTGACAAATTGACGCATT
TACGTATAACTTTGATATGATACTGGTTAGACAACTCCTTGTGCGTCCAA
ACATGATCGAGCATTTTCCCATCGATGTGTGTTGGAAAGCGCGGAAGCAA
ATCATAATCTTGAAGAATTTCGGCCAACAATTGATCATGATCCATTTCGA
AGCCGTCCATGTTGAAGTCTCCTAAAATAATATCAATTGTGTATCTTTCA
ATAAATTGAGCAAGACTGTAACAGAACACATCACGTTGAATTCTAGAGCC
TTTATAGagaaccaaaacacaaaattccttttcagtaaattcagcttttc
taaattttacaagAGAAAAGCATGATGAATGAT Run BLAST on NCBI transcript from alignment at sc0004802:2371..4603- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043977 ID=TCONS_00043977|Name=TCONS_00043977|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at sc0004802:2371..4603- (Clytia hemisphaerica)
AGTATTTGCAATCCAAATTTTCAATAATTAGTCCATAGAAAATATCTCCT
GATTTACAAATTATATGTTTTGTGTGCAAATTTGGCTTTTTTTCACATCC
GGTGGGTTTCCGGCTTCCAAAAAAATAAAAATCAATTTTAAATGTTTGAG
TTTCATAAATGTCACATGATCATACCATTCAAAGTTTAAAAAAATAACAA
ATTAATTTTCTTTTTCCAGCAGGAACAAATTACCAAACATTTCAAAGACC
AAGGTCAAGTCTGGATACATATGAACGTCGAAGAGACAGTTAAAGTGGAA
TAATCGAAATAGTGAATATTACAAGCGATAAGAACGATATCAAATGCTGT
CAAAAGCTGGTGGCTGAGACTCGAATCCATGCGACAAGTTGCAACGACGG
CTTTACGATGATAATGCTGACAATCTTTAAATTTTAAATGCTTCAAAGTT
TGTAAAAAATAGGATGAAACGATAACGATACATTTACTGCAATTACTTTT
AACGCATAAGCAGAATCAAATGTTGGTGGTTGTGATGAAATGTTTAAAGC
CATTCGATTTCTTTGTCAAGTAAGACTGAAAATGACAAATGATTAATGAT
AATTATTCTGAGCATCATCAAAAATTGGCTGCTTTAGGATGAGCGAGTTT
CGCATGACAATTTGAAAATAGAAATATATATCCAGCTGTAACTCTTCGCC
ATTTCAATAATTGTGTTATTAATCTTTGAAATATCAACCAGAATGCATAC
ATGTTTAGATGAATTAATTAACTAGCAAATGTACTCCCGTGTTTTTCCAT
ATTGTCTATTCTTAGTTTTGTGACAATCTTTTTGATTTTTGAGTAGGTAA
ATGAATTACAAATAAGAATTCAAGAAAATAACAAAAAAATTAACAAAAAT
ACCTAAAAATAAATAATTTTTAATTATGAAAAAAAATTCTAAGAAAAACA
CAAGAAAAATGATTTGATATAAAAAAGGAATAAATACTACAATAAATAAA
ATAATACAACAAATGCTATAGGGGCCGTCCATATAGTACGTACGCAAAGA
TTTTCCAAAAATTTGATACCCCTCCCCATTGTACGCAGAGAACAATAGAA
ATGATGTCATTTAAACAATAGATGTACGCTATTGCTAAACCCCCTTCTTC
CCCCTTCACTACTACGTACGTACTATATCGATGGCCCCATATCCGCAGGT
ACGTAAGTTTCCTGACGATAATGAAAACGAAAATGATGAAAGACGTTTCT
AAACTCCTTGTCCTTTCTCTATTGATTTTATTTCTACATGAGACCATCCA
TAGAAGACTTACACACACAATGAGTAACTAACTTTATCCATTGATGTCAT
TCAACGCAGATCTCTCCCGAGTTCATGCAAAAGAATTATGGATGTCTTTT
ACGAATGGTCCCAAAAGGTCAAAAAAATTACGTACGTATGGATAGGGGGT
GGTGGGACGACCTTAATTGCAAATTTCTAAATTGACAAACCTTAATAATC
CTTTGTTTATTATAAAATTCCACTTTATCCAAAATCCTATCCACAAATTT
TCATTTTTTAGACAGACCTGCTAAAGACTTCCAAGTTTAATTAAACTATA
AAATGAGACTCATATAATCACAAAATTAATAGGAGTGTATCTAATCATTG
ACTAACTTTTTGAAAGTCGCCAAAAAGAGAGGACTTTTCTTTCTTCCTGA
AATATGGACCTCTCATAATTAAATCATCGGAGAGTTAAGATCACCCCTTG
ACCACCCCCAGATCAACCCCCTCCCTTGTACCCGCCCTTGACTCTGGCGG
GCATGACTCAGCTAGCAGTCTCTGTTCTAGCAATCTCCGTTCTCGCATTT
GGCTGTAAGTGATAATTTGATGCCATCATGGTCTGACAAATTGACGCATT
TACGTATAACTTTGATATGATACTGGTTAGACAACTCCTTGTGCGTCCAA
ACATGATCGAGCATTTTCCCATCGATGTGTGTTGGAAAGCGCGGAAGCAA
ATCATAATCTTGAAGAATTTCGGCCAACAATTGATCATGATCCATTTCGA
AGCCGTCCATGTTGAAGTCTCCTAAAATAATATCAATTGTGTATCTTTCA
ATAAATTGAGCAAGACTGTAACAGAACACATCACGTTGAATTCTAGAGCC
TTTATAGAGAACCAAAACACAAAATTCCTTTTCAGTAAATTCAGCTTTTC
TAAATTTTACAAGAGAAAAGCATGATGAATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043977-exon-sc0004802-1575043694:2371..4603 | TCONS_00043977-exon-sc0004802-1575043694:2371..4603 | Clytia hemisphaerica | exon |
| TCONS_00043977-exon-sc0004802-1510915933:2371..4603 | TCONS_00043977-exon-sc0004802-1510915933:2371..4603 | Clytia hemisphaerica | exon |
| TCONS_00043977-exon-sc0004802-1491911889:2371..4603 | TCONS_00043977-exon-sc0004802-1491911889:2371..4603 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004802 | supercontig | sc0004802:2371..4603 - |
Blast
The following BLAST results are available for this feature:
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