TCONS_00043971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043971
Unique NameTCONS_00043971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043971 ID=TCONS_00043971|Name=TCONS_00043971|organism=Clytia hemisphaerica|type=transcript|length=590bp
GGCAATGACTTTTTATTGACGATGGTTGTTAATGGGAttgtgaagaagaa
aaataagcgcggaatgaaaagaaaatttattttacacAAAACAAAATTCT
AGTCATtcaaagacaaaagaaaaagctGTTGATTGAAAATGTCTAAAAGG
AAGCAAGAAACTTTTGATAAGAAAACAGATTGGAAAGAGCATGCAGGGAA
AGTGAAGGTGAAGCGAACCTCGAGAAATGGCAAATCAAGCAAGGATAAAA
CAACACCAGCTGCGATTATTATTCCACTTGAAGAGACTATTTTAAAACAT
GGTGAATTTAAATGCATATTACATGCCACAGACCCAGCAGGTGCTCTCAA
GAAATATCCAAGATTAACATCTCAAGAGTACGTCAACTTTGAATTCGATG
AGATTACATTAGAAACCATCAAAGAGGCATGTAATAAACATTTCAGACAC
AAGTCTGAAAAAGTCTTGCCACCTGGTATGACATGTGATCTTTTAACATC
TGATCTTGGTCCGTCGTGTGAAAAGTTGAGCCATTTAGAGGAAAAACTTG
CCCATGTCAGGTTCATAAAAATCCAAGACCGATCCAATGC
Run BLAST on NCBI

protein sequence of TCONS_00043971-protein

>TCONS_00043971-protein ID=TCONS_00043971-protein|Name=TCONS_00043971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MSKRKQETFDKKTDWKEHAGKVKVKRTSRNGKSSKDKTTPAAIIIPLEET
ILKHGEFKCILHATDPAGALKKYPRLTSQEYVNFEFDEITLETIKEACNK
HFRHKSEKVLPPGMTCDLLTSDLGPSCEKLSHLEEKLAHVRFIKIQDRSN
Run BLAST on NCBI

transcript from alignment at sc0004795:866..1455

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043971 ID=TCONS_00043971|Name=TCONS_00043971|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at sc0004795:866..1455 (Clytia hemisphaerica)
GCATTGGATCGGTCTTGGATTTTTATGAACCTGACATGGGCAAGTTTTTC
CTCTAAATGGCTCAACTTTTCACACGACGGACCAAGATCAGATGTTAAAA
GATCACATGTCATACCAGGTGGCAAGACTTTTTCAGACTTGTGTCTGAAA
TGTTTATTACATGCCTCTTTGATGGTTTCTAATGTAATCTCATCGAATTC
AAAGTTGACGTACTCTTGAGATGTTAATCTTGGATATTTCTTGAGAGCAC
CTGCTGGGTCTGTGGCATGTAATATGCATTTAAATTCACCATGTTTTAAA
ATAGTCTCTTCAAGTGGAATAATAATCGCAGCTGGTGTTGTTTTATCCTT
GCTTGATTTGCCATTTCTCGAGGTTCGCTTCACCTTCACTTTCCCTGCAT
GCTCTTTCCAATCTGTTTTCTTATCAAAAGTTTCTTGCTTCCTTTTAGAC
ATTTTCAATCAACagctttttcttttgtctttgaATGACTAGAATTTTGT
TTTgtgtaaaataaattttcttttcattccgcgcttatttttcttcttca
caaTCCCATTAACAACCATCGTCAATAAAAAGTCATTGCC

Coding sequence (CDS) from alignment at sc0004795:866..1455

>TCONS_00043971 ID=TCONS_00043971|Name=TCONS_00043971|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0004795:866..1455 (Clytia hemisphaerica)
ATTGGATCGGTCTTGGATTTTTATGAACCTGACATGGGCAAGTTTTTCCT
CTAAATGGCTCAACTTTTCACACGACGGACCAAGATCAGATGTTAAAAGA
TCACATGTCATACCAGGTGGCAAGACTTTTTCAGACTTGTGTCTGAAATG
TTTATTACATGCCTCTTTGATGGTTTCTAATGTAATCTCATCGAATTCAA
AGTTGACGTACTCTTGAGATGTTAATCTTGGATATTTCTTGAGAGCACCT
GCTGGGTCTGTGGCATGTAATATGCATTTAAATTCACCATGTTTTAAAAT
AGTCTCTTCAAGTGGAATAATAATCGCAGCTGGTGTTGTTTTATCCTTGC
TTGATTTGCCATTTCTCGAGGTTCGCTTCACCTTCACTTTCCCTGCATGC
TCTTTCCAATCTGTTTTCTTATCAAAAGTTTCTTGCTTCCTTTTAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027632XLOC_027632Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043971-proteinTCONS_00043971-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043971-exon-sc0004795-1491911889:866..1455TCONS_00043971-exon-sc0004795-1491911889:866..1455Clytia hemisphaericaexon
TCONS_00043971-exon-sc0004795-1510915933:866..1455TCONS_00043971-exon-sc0004795-1510915933:866..1455Clytia hemisphaericaexon
TCONS_00043971-exon-sc0004795-1575043694:866..1455TCONS_00043971-exon-sc0004795-1575043694:866..1455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004795supercontigsc0004795:866..1455 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.30046	0.449701	0.609811	1.5323	0.361771	0.410166	0.331846	0.62788	0.510288	0.195694	0.872257	0.241277	0.592384	0.858673	0.103192	0.118018	0	0	0	0	0	0.131742	0	0	1.13945	1.49249	0	0.136266	0	0.1053
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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