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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043967 ID=TCONS_00043967|Name=TCONS_00043967|organism=Clytia hemisphaerica|type=transcript|length=1827bp CTTAGATACTTGAGAGAGGGAGAAGATTATCAATAACACTCTGGTTAACT CTAAGATTTGTCGACAAAATGATAACAGAAAACGTatgatacacccctgt atcagtgacccggtcacaTATCCCGTCTCGATGGAAACCggtgaaaaaat tacaaagaatgACCTAACTCTAACACGTTCACTGTCAagccattttcaga atttgacttcattgaatttcatcgaaagtttgactttcGGAGGCTCCGGT GGCCTTGGTTCTGCTTTAAATGCGTACAGATTGCATACCGATCGACACAG AATTTAAGGAAgattccaaaaatacaaaaacgaaGCAAGCAAAAGtattt gtatcaaaggttaTGGCCCTTGGAGAACTGTCGGTATTTTGACACCTCTA CGGCAACAAGGTCAACtcggtcaaaattgaaaaaaaattattaatgaatT CTAGGAATAATGcttaaaagtgaattttacCGTACTCCAGCGAGAATTAA GAGATTACAAATACAGACCCGGTGTGTGTGACGTTTTACTTGTTTCATAA CTTCTCCGATGGtcgatttcaaaatttcactgaGTTACTGCGACAGGGGT ATTACGGTGGCACTTAAAGAATTCAGAACCAGCGTGGAATCGCCATGAAC ACAAAGACAGGAGACAGTATTAATTCTATATGGTATTCAATGCTCAGATG CACAGTATACTCGTAGTTGGCAGCAAACTTTTTAAGctcttatttggaaa atatgtactttttattcttttcttagcgaaagaaaatactttataattat ataatatatttgcacccctgtctcagagtCAGAGATGATTTAAGTCAGAG ATGCGAGACCTCCGAGAGAATGAACAGCATATGAACGAACGGGAAATTAT GTCTTGCTTCATACTGTACCATGTCTCATTATCAAGCCTTTAGAAATAAT CCCTTTCGTCAAGGACATTTCCTAGGAAGGACGAGAGATCGAGGCGTCCA TTTCTTTAACAAACGTTCTTATCCTGTTGTAAAGTGTTTGTAGCCTTACC CTTCCCACTATCTTCTTCTGGAAAATAATATACAAAGACATTGTATTCAC ATGAACAACAATGGACAATGAGTGACTATTAACATTTGAACATTTATTCC TAGCTACTCTGCACACTAACAAGCCTCTTGGGATAGTGTGGCAGTagtaa ttaaaaatgacatgatgacggcatttgatattttttaattattcgaTAAT TAACTCCTTTCCATTTCTCGGTTCCGTATCACTTAACAACGCCTTCAACT TGGGGCGCAAATGGGCGATTCGCGTTTTAACGCGAACAATTTTCCGCCCT AACTTTAGAATGAAAATACGAAGAATAGACATTGTTTTTCGTTTAGTGAA CCAAAGATTGTGTACAACTGGCTTTCGTAGAACACAATGCCAAAGGAATC TCCAATCATGGTCGCTTCATTATTTCTTATTCGGCATTTCAAAAAAGGGT CCTAAAATCAGAAGGTTTTCTTCTTCAATTTCCGAAGAACATGTTCCAAA TCTTCGAAGCCATATTTTTCCGATAGCTTGATCGATCAGTGAACGGGATC TGAAAACAGAATGGAAAAAGACATCGTCAGTGAAGTATGAGAGGCGATTA AACAAattatccgattcaccccgggtatccgattcaccccgttCTACGGT AGatgatgttttaatattttcatggtgACCAATTTTTGCTGAAGGcccct tttcagattttcttaggattttattttatggtcttttgtaaataagaaca aaggctGTGAAATCCGGCAAATTTAAT Run BLAST on NCBI transcript from alignment at sc0004786:3489..5315 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043967 ID=TCONS_00043967|Name=TCONS_00043967|organism=Clytia hemisphaerica|type=transcript|length=1827bp|location=Sequence derived from alignment at sc0004786:3489..5315 (Clytia hemisphaerica) ATTAAATTTGCCGGATTTCACagcctttgttcttatttacaaaagaccat
aaaataaaatcctaagaaaatctgaaaaggggCCTTCAGCAAAAATTGGT
caccatgaaaatattaaaacatcatCTACCGTAGaacggggtgaatcgga
tacccggggtgaatcggataatTTGTTTAATCGCCTCTCATACTTCACTG
ACGATGTCTTTTTCCATTCTGTTTTCAGATCCCGTTCACTGATCGATCAA
GCTATCGGAAAAATATGGCTTCGAAGATTTGGAACATGTTCTTCGGAAAT
TGAAGAAGAAAACCTTCTGATTTTAGGACCCTTTTTTGAAATGCCGAATA
AGAAATAATGAAGCGACCATGATTGGAGATTCCTTTGGCATTGTGTTCTA
CGAAAGCCAGTTGTACACAATCTTTGGTTCACTAAACGAAAAACAATGTC
TATTCTTCGTATTTTCATTCTAAAGTTAGGGCGGAAAATTGTTCGCGTTA
AAACGCGAATCGCCCATTTGCGCCCCAAGTTGAAGGCGTTGTTAAGTGAT
ACGGAACCGAGAAATGGAAAGGAGTTAATTAtcgaataattaaaaaatat
caaatgccgtcatcatgtcatttttaattactACTGCCACACTATCCCAA
GAGGCTTGTTAGTGTGCAGAGTAGCTAGGAATAAATGTTCAAATGTTAAT
AGTCACTCATTGTCCATTGTTGTTCATGTGAATACAATGTCTTTGTATAT
TATTTTCCAGAAGAAGATAGTGGGAAGGGTAAGGCTACAAACACTTTACA
ACAGGATAAGAACGTTTGTTAAAGAAATGGACGCCTCGATCTCTCGTCCT
TCCTAGGAAATGTCCTTGACGAAAGGGATTATTTCTAAAGGCTTGATAAT
GAGACATGGTACAGTATGAAGCAAGACATAATTTCCCGTTCGTTCATATG
CTGTTCATTCTCTCGGAGGTCTCGCATCTCTGACTTAAATCATCTCTGac
tctgagacaggggtgcaaatatattatataattataaagtattttctttc
gctaagaaaagaataaaaagtacatattttccaaataagagCTTAAAAAG
TTTGCTGCCAACTACGAGTATACTGTGCATCTGAGCATTGAATACCATAT
AGAATTAATACTGTCTCCTGTCTTTGTGTTCATGGCGATTCCACGCTGGT
TCTGAATTCTTTAAGTGCCACCGTAATACCCCTGTCGCAGTAACtcagtg
aaattttgaaatcgaCCATCGGAGAAGTTATGAAACAAGTAAAACGTCAC
ACACACCGGGTCTGTATTTGTAATCTCTTAATTCTCGCTGGAGTACGgta
aaattcacttttaagCATTATTCCTAGAattcattaataattttttttca
attttgaccgaGTTGACCTTGTTGCCGTAGAGGTGTCAAAATACCGACAG
TTCTCCAAGGGCCAtaacctttgatacaaataCTTTTGCTTGCttcgttt
ttgtatttttggaatcTTCCTTAAATTCTGTGTCGATCGGTATGCAATCT
GTACGCATTTAAAGCAGAACCAAGGCCACCGGAGCCTCCgaaagtcaaac
tttcgatgaaattcaatgaagtcaaattctgaaaatggctTGACAGTGAA
CGTGTTAGAGTTAGGTcattctttgtaattttttcaccGGTTTCCATCGA
GACGGGATAtgtgaccgggtcactgatacaggggtgtatcatACGTTTTC
TGTTATCATTTTGTCGACAAATCTTAGAGTTAACCAGAGTGTTATTGATA
ATCTTCTCCCTCTCTCAAGTATCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00043967-exon-sc0004786-1491911889:3489..5315 | TCONS_00043967-exon-sc0004786-1491911889:3489..5315 | Clytia hemisphaerica | exon |
TCONS_00043967-exon-sc0004786-1510915933:3489..5315 | TCONS_00043967-exon-sc0004786-1510915933:3489..5315 | Clytia hemisphaerica | exon |
TCONS_00043967-exon-sc0004786-1575043694:3489..5315 | TCONS_00043967-exon-sc0004786-1575043694:3489..5315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0004786 | supercontig | sc0004786:3489..5315 . |
Blast
The following BLAST results are available for this feature:
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