|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043965 ID=TCONS_00043965|Name=TCONS_00043965|organism=Clytia hemisphaerica|type=transcript|length=801bpRun BLAST on NCBI protein sequence of TCONS_00043965-protein >TCONS_00043965-protein ID=TCONS_00043965-protein|Name=TCONS_00043965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNRun BLAST on NCBI transcript from alignment at sc0004785:3278..5057+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00043965 ID=TCONS_00043965|Name=TCONS_00043965|organism=Clytia hemisphaerica|type=transcript|length=1780bp|location=Sequence derived from alignment at sc0004785:3278..5057+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0004785:3278..5057+ >TCONS_00043965 ID=TCONS_00043965|Name=TCONS_00043965|organism=Clytia hemisphaerica|type=CDS|length=3192bp|location=Sequence derived from alignment at sc0004785:3278..5057+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00043965 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 1.061e-33 Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 2
Query: 2 VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCP 346
VDG W+ W+ W C+ CG G+Q+RTRTC NP+ +HGG PC G+ E CN PCP+HG W W W C + CG G Q R+R+C++P PA GG C G T Q Q+CN CP
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAET-QMQVCNERNCP 4698 HSP 2 Score: 119.398 bits (298), Expect = 2.660e-29 Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 2
Query: 2 VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCP 346
+ G W WA+W+ CS+ CG G++ RTR C++P P++GG C G +S CN+ PCP HG W WS W C + C G R R CD+P P++GG C G SQ Q CN CP
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC-GGPDSQIQRCNTDMCP 4812 HSP 3 Score: 115.931 bits (289), Expect = 3.194e-28 Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 2
Query: 2 VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCP 346
V G ++ W+ W CS+ CG G Q R+R C P P +GG PC G E +NC PCP+ G W +WS W +C + CG G Q R+R C++P+ HGG C G + +CN+ CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAV-EIIMCNIRPCP 4641 HSP 4 Score: 115.931 bits (289), Expect = 3.537e-28 Identity = 75/235 (31.91%), Postives = 103/235 (43.83%), Query Frame = 2
Query: 8 GDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCPEMCDEFFKMCDCIDVPVIYDMSILTTNSSFYGINDTAVNSSLDAISTWDAEAVKLACKNAQCSETSLQSAITQIEADVN----TLQSFIDDASSSIKLTRKVISCKANVWGRRGELFEHYQI 700
G+W+ W+ W TCS C G R RTC NP P +GG C G ++ Q CNT CP+ G WG W +W+ C CG G + R R+CD P P GG C G T+Q CNV CP I N +GI +N+++ D ++ N SL SA+ +I + +N T I +A + LT V + V GE+ + I
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGD-TTQVTRCNVQACPGGPQRARGSV------------IGNINDVEFGI--AFLNATITDSPNSDTRIIRAKITNV---PRSLGSAMRKIVSILNPIYWTTAKEIGEAVNGFTLTNAVFKRETQVEFATGEILQMSHI 4974 HSP 5 Score: 115.161 bits (287), Expect = 6.822e-28 Identity = 53/115 (46.09%), Postives = 66/115 (57.39%), Query Frame = 2
Query: 2 VDGDWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTDCDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNVHYCP 346
V G W+ W W TCS CG G+Q+R R C NP P GG+ C G T+ Q CN CPIHG+W W++W+ C CG G + R+R C DP P +GG C G+ Q CN CP
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGS-DVQSDFCNSDPCP 4755 The following BLAST results are available for this feature:
BLAST of TCONS_00043965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.