TCONS_00043959 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00043959
Unique Name	TCONS_00043959
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2041

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0004773:2019..5645+
coding sequence from alignment at sc0004773:2019..5645+

transcript sequence

>TCONS_00043959 ID=TCONS_00043959|Name=TCONS_00043959|organism=Clytia hemisphaerica|type=transcript|length=2041bp
caatcattttctcaagcgaagagtacgcgaagctcTCTAAGAAAAACTCT
AAGAAAAATCGATCGACTAAATTTTCCAAGTTCTAAGTTTTCTGTGTTGT
AATTTAGttttaaacttcaaaaaagttgtattttgaCCTGCTTTTACGGG
TTATTTATTTAGCATTGGGTGGTATGAAAAGTGGGTACAGAGTAATAAAT
ACAacgtaaaaaatatattttttcttttttgatttttgattttgattatt
GATTTGTAATTCATTTTTCAGAGCATTAAacttgaaataaataaaaaagt
aaaatgggtCGATGTCGGACTATTTTTGTTGGGTTGGTAACTGGCCTGTT
AGCTTTTGTCTTCATTACAGCAGGGGCTATCAAACTGACACCTAAAATTT
CTGTGCAAGCACACAAGAGAATGTATCGAGATTTCGTTCAGTATGCTAAA
CTTCATCCAGCTGTTAAATTTGGTTATGATATTGATCCCAAGAAATTCAT
GCCACAAGTTGGTGTTGTGGAAGTCATCGCTGGCACTTTTCTTGTTGTTG
GACCACGATTGACACGCATGATCTGTTGTTTAGTTCTCTCCTCTCTCATG
GTTGGTGCACTGTATTTTGTAAAAGCTGCGAATAAACCTCGGGAAGAATG
GGTTGTTCCTGCTGTGGTTCTCTTCTTAACCTTCATTCGATTCAATTTAT
TCTTGTCACCCACTGTCATTGTCACTgagaaggaaaagaagaaaaataaa
aaagagaagaaagcaAAGAAGGAACAATAGAATGTTTAGaacttttggaa
ttttttaatttgtgcatttctaaagattttactttataaCTACACAAATA
TACATTTTATAGGGTTTTCGGTTTTCGTTtgctttttatttaatttttaa
tatttgataTATCACATTTAGCATTTTATTCGTATTTATCTTATCACACA
TCATTATCTTAGAATGTTTCAGTAATTTTTGCTATGTCTTTCCGTGCACC
CATCTTTTAAAATGTATTCAACCGCCttgatatttttatataaatcaACA
CCTGTTTGTTAAAAATGAACCGTCGAATGAACccgattttcaagaaaaaa
aattcaggtcGCCAGATCTGGATATGTCCTgttttttttgggattttcac
gagattttatcattaaatTTAGTAAATTATAGTACCGTATTCTCTAAAAc
ttataaatttttatatatcggctcaaaatttgatagaaattattAGTATA
TTATACTGTAGGTAGGATTTAATTTCTAGATctagctttttgaaaaatat
atatctgacgtcaatttttttctcaaaacttccTAGATCGACTATGTATA
TAAGGGTTAAATGCTTTTCCTGAATAATATACCATCTTTTCATTTATCTG
TTTCTTTCATTCAGATATAATAAAATGAATATATGCAATAATTACATACC
AAAGCGACTTTTCCGATTGGCTGATGTGACTAGAGGTCTGGTGACGAGTG
CTCGTTTTGCAGCGGCCAATCAACAAGTAGAACAAGTACAGGAAGAACGA
AATGAACTGGAAGAAAGTGACCCGtttctgaaaaatgaaatcaagAAATA
TAATACAGGTAAAAGATGGTTGGCACGAATGATGGGTCAAGATCCGGACA
ATTTTTCACAGAAGGATGTGGATGAAGCCATTGCATATTTGTTGCCAAGC
AGTTTGTTTGCCAAAGATGCACGACCTGTCTTGAAACACCCTTATGAACT
CTTCCCCAAAACTAAAGAATCATTGTTCGATAGTAACAACCGACCACTTT
CAAGTGCTTTTTACACTGGTAAACCAAAGTTTTACGATTTGACGTACCAA
GTATGGGAGTTGAAGGAAAAATTAGACACCAATACCGCCATTACGGCTGA
AGACTCCCCTGCGCCGTCCAATGAAGATAAAGTGATGCAATGGATGAAAC
AATATCAACTGGAGCAAAAATTAAACGAGAaactaaatgaaaaAATATCA
ACTGGAGCAAAAATTAAACGAGAaactaaatgaaaaattat

Run BLAST on NCBI

protein sequence of TCONS_00043959-protein

>TCONS_00043959-protein ID=TCONS_00043959-protein|Name=TCONS_00043959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MNICNNYIPKRLFRLADVTRGLVTSARFAAANQQVEQVQEERNELEESDP
FLKNEIKKYNTGKRWLARMMGQDPDNFSQKDVDEAIAYLLPSSLFAKDAR
PVLKHPYELFPKTKESLFDSNNRPLSSAFYTGKPKFYDLTYQVWELKEKL
DTNTAITAEDSPAPSNEDKVMQWMKQYQLEQKLNEKLNEKISTGAKIKRE
TK

Run BLAST on NCBI

transcript from alignment at sc0004773:2019..5645+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00043959 ID=TCONS_00043959|Name=TCONS_00043959|organism=Clytia hemisphaerica|type=transcript|length=3627bp|location=Sequence derived from alignment at sc0004773:2019..5645+ (Clytia hemisphaerica)
caatcattttctcaagcgaagagtacgcgaagctcTCTAAGAAAAACTCT
AAGAAAAATCGATCGACTAAATTTTCCAAGTTCTAAGTTTTCTGTGTTGT
AATTTAGttttaaacttcaaaaaagttgtattttgaCCTGCTTTTACGGG
TTATTTATTTAGCATTGGGTGGTATGAAAAGTGGGTACAGAGTAATAAAT
ACAacgtaaaaaatatattttttcttttttgatttttgattttgattatt
GATTTGTAATTCATTTTTCAGAGCATTAAacttgaaataaataaaaaagt
aaaatgggtCGATGTCGGACTATTTTTGTTGGGTTGGTAACTGGCCTGTT
AGCTTTTGTCTTCATTACAGCAGGGGCTATCAAACTGACACCTAAAATTT
CTGTGCAAGCACACAAGAGAATGGTAGGTGAAAggtgttatttttctttt
tagttcaaTACTTACAGTGAAATGTTAAAACTTAGTTTGAAAAGCTCCTT
AAAATCTACCGAATGCGAAATTTAGGTGAAAGCTATATATAGAATTGTGA
AAAGAAGTACATTTAAAAGAATTGGTATTCTGAAATAAGCCAAGAAATTC
TAAACTTCTTTAGTAAGTTAaggattttttcaaatcttagtTGAACTGAT
ATATCATTTGTCAGATGAaatctactttaggcgtacaaactttcacgagc
agaaactttcgcgattttcacgAAAGTAGATGTCTTAAAAATTCTTAACA
GAGcaattcgcaaaagtttatgtttgcgaaaaacattttttttctcatat
tcgcgaaagtaaatataaatttcacaattttttacCTCAAAAATTTCTGC
TCgggaaagtttgtacgcctaaagtattatGTTATTTTACCGTTTTCTTG
TATTGAAATTTAATGACCCAATTTAATACACAAGAAAGGCCCCTTTGTCT
ACCATTGTTATGTTTTGATTAACCAAATTCTTAAATATTTCAGTATCGAG
ATTTCGTTCAGTATGCTAAACTTCATCCAGCTGTTAAATTTGGTTATGAT
ATTGATCCCAAGAAATTCATGCCACAAGTTGGTGTTGTGGAAGTCATCGC
TGGCACTTTTCTTGTTGTTGGACCACGATTGACACGCATGATCTGTTGTT
TAGTTCTCTCCTCTCTCATGGTTGGTGCACTGTATTTTGTAAAAGCTGCG
AATAAACCTCGGGAAGAATGGGTTGTTCCTGCTGTGGTTCTCTTCTTAAC
CTTCATTCGATTCAATTTATTCTTGTCACCCACTGTCATTGTCACTgaga
aggaaaagaagaaaaataaaaaagagaagaaagcaAAGAAGGAACAATAG
AATGTTTAGaacttttggaattttttaatttgtgcatttctaaagatttt
actttataaCTACACAAATATACATTTTATAGGGTTTTCGGTTTTCGTTt
gctttttatttaatttttaatatttgataTATCACATTTAGCATTTTATT
CGTATTTATCTTATCACACATCATTATCTTAGAATGTTTCAGTAATTTTT
GCTATGTCTTTCCGTGCACCCATCTTTTAAAATGTATTCAACCGCCttga
tatttttatataaatcaACACCTGTTTGTTAAAAATGAACCGTCGAATGA
ACccgattttcaagaaaaaaaattcaggtcGCCAGATCTGGATATGTCCT
gttttttttgggattttcacgagattttatcattaaatTTAGTAAATTAT
AGTACCGTATTCTCTAAAActtataaatttttatatatcggctcaaaatt
tgatagaaattattAGTATATTATACTGTAGGTAGGATTTAATTTCTAGA
Tctagctttttgaaaaatatatatctgacgtcaatttttttctcaaaact
tccTAGATCGACTATGTATATAAGGGTTAAATGCTTTTCCTGAATAATAT
ACCATCTTTTCATTTATCTGTTTCTTTCATTCAGATATAATAAAATGAAT
ATATGCAATAATTACATACCAAAGCGACTTTTCCGATTGGCTGATGTGAC
TAGAGGTCTGGTGACGAGTGCTCGTTTTGCAGCGGCCAATCAACAAGTAG
AACAAGTACAGGAAGAACGAAATGAACTGGAAGAAAGTGACCCGtttctg
aaaaatgaaatcaagAAATATAATACAGGTACGTGTGAACATGTATTTTG
TAAGTGAAGGTGTGTCCCTTAGATTGATTCGTTTCATCTTTAAAGTTTTA
TGTTTGCAAGTACTTGTTTAGTCCGAACGGAAATTTgaaggaaatttatt
ttcattcattttgaaaaagaaggaCGAAGGATAATCCCGTCGATTAAGAC
GGCGTGAGTCCTATCCAGTCATAGTTGCCTATTCCAGGATATCAGATAAA
GCGTATCGGCGATATTACACGAAAACAAGAGCTGAGTGCTTAGTCTGACA
TGCCTCCTGCTCTTATTTCAGAGTGTAttatatgtttttgataattcttt
gtgttttccaaacattttcctctgcaatgacatcgattagagttaacctg
tcatcactgacctgtgacctgtgacctgcgacctgtgacctgtgacctgc
gttttacactaaccgcccGTTTAGGATTTGAGAACGATGGCTATTGCGCC
TTCTTTTTATTGGTGggagaaaaaggttttgacttaaaattagTTAACGA
TTATTCAAATGAAAATGGACGGACCATTGCAAAGTAATATTTTATAACTT
TCTAAATAATTGAAATGTTCTTAGTCCCTTTATGTGAAGACGAGTAATAA
GACCAGCTtaagataaaaaatgtttataaaattattaattgaaaattgaa
atgaattaaaAATTGTTTATGTTTCCAGGTAAAAGATGGTTGGCACGAAT
GATGGGTCAAGATCCGGACAATTTTTCACAGAAGGATGTGGATGAAGCCA
TTGCATATTTGTTGCCAAGCAGTTTGTTTGCCAAAGATGCACGACCTGTC
TTGAAACACCCTTATGAACTCTTCCCCAAAACTAAAGAATCATTGGTAAG
ACTCTGTGTTTATTCAGCTTAATCCAGGTTTAAGTCTCCGACGTGTGAgg
ttaaaatagaatggaaccttttttggtaaatttaaagtaacttagagtgg
aaatcaatattttcaaccaaccaatattaaaaacaacaattttcaGTGCC
GCCTATTCGCGTATTTTATCCACCTATGAATTTAGTAATTTAGGCTTAAT
AGGAAGGaaaaaaacctctaaatttctGTTCATCTTTTTTTAGTTCGATA
GTAACAACCGACCACTTTCAAGTGCTTTTTACACTGGTAAACCAAAGTTT
TACGATTTGACGTACCAAGTATGGGAGTTGAAGGAAAAATTAGACACCAA
TACCGCCATTACGGCTGAAGACTCCCCTGCGCCGTCCAATGAAGATAAAG
TGATGCAATGGATGAAACAATATCAACTGGAGCAAAAATTAAACGAGAaa
ctaaatgaaaaattataNGTTACGGCTGAAGACTCCCCTGCGCCGTCCAA
TGAAGATAAAGTGATGCAATGGATGAAACAATATCAACTGGAGCAAAAAT
TAAACGAGAaactaaatgaaaaattat

Coding sequence (CDS) from alignment at sc0004773:2019..5645+

>TCONS_00043959 ID=TCONS_00043959|Name=TCONS_00043959|organism=Clytia hemisphaerica|type=CDS|length=2436bp|location=Sequence derived from alignment at sc0004773:2019..5645+ (Clytia hemisphaerica)
ATGAATATATGCAATAATTACATACCAAAGCGACTTTTCCGATTGGCTGA
TGTGACTAGAGGTCTGGTGACGAGTGCTCGTTTTGCAGCGGCCAATCAAC
AAGTAGAACAAGTACAGGAAGAACGAAATGAACTGGAAGAAAGTGACCCG
tttctgaaaaatgaaatcaagAAATATAATACAGGTAAAAGATGGTTGGC
ACGAATGATGGGTCAAGATCCGGACAATTTTTCACAGAAGGATGTGGATG
AAGCCATTGCATATTTGTTGCCAAGCAGTTTGTTTGCCAAAGATGCACGA
CCTGTCTTGAAACACCCTTATGAACTCTTCCCCAAAACTAAAGAATCATT
GTTCGATAGTAACAACCGACCACTTTCAAGTGCTTTTTACACTGGTAAAC
CAAAGTTTTACGATTTGACGTACCAAGTATGGGAGTTGAAGGAAAAATTA
GACACCAATACCGCCATTACGGCTGAAGACTCCCCTGCGCCGTCCAATGA
AGATAAAGTGATGCAATGGATGAAACAATATCAACTGGAGCAAAAATTAA
ACGAGAaactaaatgaaaaAATATCAACTGGAGCAAAAATTAAACGAGAa
actaaatgaATGAATATATGCAATAATTACATACCAAAGCGACTTTTCCG
ATTGGCTGATGTGACTAGAGGTCTGGTGACGAGTGCTCGTTTTGCAGCGG
CCAATCAACAAGTAGAACAAGTACAGGAAGAACGAAATGAACTGGAAGAA
AGTGACCCGtttctgaaaaatgaaatcaagAAATATAATACAGGTAAAAG
ATGGTTGGCACGAATGATGGGTCAAGATCCGGACAATTTTTCACAGAAGG
ATGTGGATGAAGCCATTGCATATTTGTTGCCAAGCAGTTTGTTTGCCAAA
GATGCACGACCTGTCTTGAAACACCCTTATGAACTCTTCCCCAAAACTAA
AGAATCATTGTTCGATAGTAACAACCGACCACTTTCAAGTGCTTTTTACA
CTGGTAAACCAAAGTTTTACGATTTGACGTACCAAGTATGGGAGTTGAAG
GAAAAATTAGACACCAATACCGCCATTACGGCTGAAGACTCCCCTGCGCC
GTCCAATGAAGATAAAGTGATGCAATGGATGAAACAATATCAACTGGAGC
AAAAATTAAACGAGAaactaaatgaaaaAATATCAACTGGAGCAAAAATT
AAACGAGAaactaaatgaATGAATATATGCAATAATTACATACCAAAGCG
ACTTTTCCGATTGGCTGATGTGACTAGAGGTCTGGTGACGAGTGCTCGTT
TTGCAGCGGCCAATCAACAAGTAGAACAAGTACAGGAAGAACGAAATGAA
CTGGAAGAAAGTGACCCGtttctgaaaaatgaaatcaagAAATATAATAC
AGGTAAAAGATGGTTGGCACGAATGATGGGTCAAGATCCGGACAATTTTT
CACAGAAGGATGTGGATGAAGCCATTGCATATTTGTTGCCAAGCAGTTTG
TTTGCCAAAGATGCACGACCTGTCTTGAAACACCCTTATGAACTCTTCCC
CAAAACTAAAGAATCATTGTTCGATAGTAACAACCGACCACTTTCAAGTG
CTTTTTACACTGGTAAACCAAAGTTTTACGATTTGACGTACCAAGTATGG
GAGTTGAAGGAAAAATTAGACACCAATACCGCCATTACGGCTGAAGACTC
CCCTGCGCCGTCCAATGAAGATAAAGTGATGCAATGGATGAAACAATATC
AACTGGAGCAAAAATTAAACGAGAaactaaatgaaaaAATATCAACTGGA
GCAAAAATTAAACGAGAaactaaatgaATGAATATATGCAATAATTACAT
ACCAAAGCGACTTTTCCGATTGGCTGATGTGACTAGAGGTCTGGTGACGA
GTGCTCGTTTTGCAGCGGCCAATCAACAAGTAGAACAAGTACAGGAAGAA
CGAAATGAACTGGAAGAAAGTGACCCGtttctgaaaaatgaaatcaagAA
ATATAATACAGGTAAAAGATGGTTGGCACGAATGATGGGTCAAGATCCGG
ACAATTTTTCACAGAAGGATGTGGATGAAGCCATTGCATATTTGTTGCCA
AGCAGTTTGTTTGCCAAAGATGCACGACCTGTCTTGAAACACCCTTATGA
ACTCTTCCCCAAAACTAAAGAATCATTGTTCGATAGTAACAACCGACCAC
TTTCAAGTGCTTTTTACACTGGTAAACCAAAGTTTTACGATTTGACGTAC
CAAGTATGGGAGTTGAAGGAAAAATTAGACACCAATACCGCCATTACGGC
TGAAGACTCCCCTGCGCCGTCCAATGAAGATAAAGTGATGCAATGGATGA
AACAATATCAACTGGAGCAAAAATTAAACGAGAaactaaatgaaaaAATA
TCAACTGGAGCAAAAATTAAACGAGAaactaaatga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_027621	XLOC_027621	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00043959-protein	TCONS_00043959-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0004773	supercontig	sc0004773:2019..5645 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.49033	9.72921	2.86813	1.71601	10.6914	7.5158	9.33037	9.4262	7.80224	6.72115	8.20571	5.8578	6.52246	5.52726	12.4812	15.8453	28.2912	22.1284	3.70937	5.36808	12.709	13.0999	22.2324	17.462	2.72602	3.07719	10.6867	7.74439	15.3456	14.5278

Blast

[Close]

BLAST of TCONS_00043959 vs. Swiss-Prot (Human)
Match: RT09 (28S ribosomal protein S9, mitochondrial OS=Homo sapiens GN=MRPS9 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.094e-29
Identity = 58/146 (39.73%), Postives = 92/146 (63.01%), Query Frame = 3

Query: 1566 SDPFLKNEIKKYNTGKRWLARMMGQDPDNFSQKDVDEAIAYLLPSSLFAKDARPVLKHPYELFPKTKESLFDSNNRPLSSAFYTGKPKFYDLTYQVWELKEKLDTNTAITAEDSPAPS---NEDKV-MQWMKQYQLEQKLNEKLNE 1991
            ++ F+K +I+++N GKR LA MMG+DP+ F+Q+D+D AIAYL PS LF K ARPV+KHP ++FP+ +   +  + RP    FYTGK  +Y L + V+ +   L+ + +     S  P      D +  +W+ + +LE+ L EKL++
Sbjct:   70 TEDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSHLQAKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSD 215

The following BLAST results are available for this feature:

BLAST of TCONS_00043959 vs. Swiss-Prot (Human)

BLAST of TCONS_00043959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RT09	5.094e-29	39.73	28S ribosomal protein S9, mitochondrial OS=Homo sa...	[more]

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TCONS_00043959 (transcript) - C. hemisphaerica