TCONS_00043956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043956
Unique NameTCONS_00043956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043956 ID=TCONS_00043956|Name=TCONS_00043956|organism=Clytia hemisphaerica|type=transcript|length=427bp
NNAGTTTGAAACGAAAGCACCAACAGGACCCTTCCAACAATGTGGTCCCA
AACAAGAAATTCATGTCCCCCCAGTATAACCATGCAGTACAGAATTATCA
GTCTAGACCACAGCTTCCAATACAACACGAGGTTCCACAACAGCAGCAAG
TGTTTATACCTCTACACCAAAGGCCCTTTCTATGGCAAGGTGCCAGTGGA
GAAGGCACAGCAACCAACCATCTCCAACCGTTTTCGCAACCACGAAGGTA
TCCAGTACCACTCAACGCTTGTTTCGTGTGTGGATAGACCGGCCATTGGA
AACACCAGTGTCCTAAAAGATAAACAATGGGATAATGGTCTGATTGCAAG
CGGTatgaaaagatatttcaaagTTTACGATCCAAAATTGGACTCTTTAG
TAAATTCGGTACCAGCAGTTTTAAAGC
Run BLAST on NCBI

protein sequence of TCONS_00043956-protein

>TCONS_00043956-protein ID=TCONS_00043956-protein|Name=TCONS_00043956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MWSQTRNSCPPSITMQYRIISLDHSFQYNTRFHNSSKCLYLYTKGPFYGK
VPVEKAQQPTISNRFRNHEGIQYHSTLVSCVDRPAIGNTSVLKDKQWDNG
LIASGMKRYFKVYDPKLDSLVNSVPAVLK
Run BLAST on NCBI

transcript from alignment at sc0004764:3437..3863

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043956 ID=TCONS_00043956|Name=TCONS_00043956|organism=Clytia hemisphaerica|type=transcript|length=427bp|location=Sequence derived from alignment at sc0004764:3437..3863 (Clytia hemisphaerica)
GCTTTAAAACTGCTGGTACCGAATTTACTAAAGAGTCCAATTTTGGATCG
TAAActttgaaatatcttttcatACCGCTTGCAATCAGACCATTATCCCA
TTGTTTATCTTTTAGGACACTGGTGTTTCCAATGGCCGGTCTATCCACAC
ACGAAACAAGCGTTGAGTGGTACTGGATACCTTCGTGGTTGCGAAAACGG
TTGGAGATGGTTGGTTGCTGTGCCTTCTCCACTGGCACCTTGCCATAGAA
AGGGCCTTTGGTGTAGAGGTATAAACACTTGCTGCTGTTGTGGAACCTCG
TGTTGTATTGGAAGCTGTGGTCTAGACTGATAATTCTGTACTGCATGGTT
ATACTGGGGGGACATGAATTTCTTGTTTGGGACCACATTGTTGGAAGGGT
CCTGTTGGTGCTTTCGTTTCAAACTNN

Coding sequence (CDS) from alignment at sc0004764:3437..3863

>TCONS_00043956 ID=TCONS_00043956|Name=TCONS_00043956|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0004764:3437..3863 (Clytia hemisphaerica)
CTTTAAAACTGCTGGTACCGAATTTACTAAAGAGTCCAATTTTGGATCGT
AAActttgaaatatcttttcatACCGCTTGCAATCAGACCATTATCCCAT
TGTTTATCTTTTAGGACACTGGTGTTTCCAATGGCCGGTCTATCCACACA
CGAAACAAGCGTTGAGTGGTACTGGATACCTTCGTGGTTGCGAAAACGGT
TGGAGATGGTTGGTTGCTGTGCCTTCTCCACTGGCACCTTGCCATAGAAA
GGGCCTTTGGTGTAGAGGTATAAACACTTGCTGCTGTTGTGGAACCTCGT
GTTGTATTGGAAGCTGTGGTCTAGACTGATAATTCTGTACTGCATGGTTA
TACTGGGGGGACATGAATTTCTTGTTTGGGACCACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027618XLOC_027618Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043956-proteinTCONS_00043956-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043956-exon-sc0004764-1491911889:3437..3863TCONS_00043956-exon-sc0004764-1491911889:3437..3863Clytia hemisphaericaexon
TCONS_00043956-exon-sc0004764-1510915933:3437..3863TCONS_00043956-exon-sc0004764-1510915933:3437..3863Clytia hemisphaericaexon
TCONS_00043956-exon-sc0004764-1575043694:3437..3863TCONS_00043956-exon-sc0004764-1575043694:3437..3863Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004764supercontigsc0004764:3437..3863 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.9234	26.7363	20.4416	11.4847	1.17711	1.90768	3.78877	3.53565	1.93052	7.44167	3.76119	3.72207	1.25371	1.77042	2.12503	2.01946	2.75878	2.00848	1.49082	0.824353	0.890254	0	5.82405	6.41557	1.83079	2.02724	0.72667	0.632145	7.61132	7.33981
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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