TCONS_00043952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043952
Unique NameTCONS_00043952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043952 ID=TCONS_00043952|Name=TCONS_00043952|organism=Clytia hemisphaerica|type=transcript|length=404bp
AAGTAAAGTTTGAGGTTGACTCTTCTTTTTAGGGTGGCGATAACTTGTTG
AGGGACGgatttccttttgaaaaaggtATCTTCGGGGAGTAATTTAGTCC
TTTTGTCAGTACGTTTTTTTCTCCTTCCGTGAGGATATGGGTAGAGAAGT
TGTGGATAAGGTTTTGGTTGAATGTGTTGGTGTGTTGTTTGATGATTGTT
TTACGACGGGTGTTTTCGGGAAGTTTGTTTTGATGCCAGAGTTTTGAATT
GGGGAGTAGATCATGTAGTGAAGGTTTCTTGTATGATCTTTTAGCATCAG
GTATTGGTTTCATGTTGAGCTGAAGCTAGTGAAAAGAATGTGTAATATGA
ATTTGTGAGTGGATGGTATTTGCAAAGATGGTATCCAGTAGGCGTGAACC
AGTG
Run BLAST on NCBI

transcript from alignment at sc0004762:3087..3490

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043952 ID=TCONS_00043952|Name=TCONS_00043952|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0004762:3087..3490 (Clytia hemisphaerica)
CACTGGTTCACGCCTACTGGATACCATCTTTGCAAATACCATCCACTCAC
AAATTCATATTACACATTCTTTTCACTAGCTTCAGCTCAACATGAAACCA
ATACCTGATGCTAAAAGATCATACAAGAAACCTTCACTACATGATCTACT
CCCCAATTCAAAACTCTGGCATCAAAACAAACTTCCCGAAAACACCCGTC
GTAAAACAATCATCAAACAACACACCAACACATTCAACCAAAACCTTATC
CACAACTTCTCTACCCATATCCTCACGGAAGGAGAAAAAAACGTACTGAC
AAAAGGACTAAATTACTCCCCGAAGATacctttttcaaaaggaaatcCGT
CCCTCAACAAGTTATCGCCACCCTAAAAAGAAGAGTCAACCTCAAACTTT
ACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027614XLOC_027614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043952-exon-sc0004762-1491911889:3087..3490TCONS_00043952-exon-sc0004762-1491911889:3087..3490Clytia hemisphaericaexon
TCONS_00043952-exon-sc0004762-1510915933:3087..3490TCONS_00043952-exon-sc0004762-1510915933:3087..3490Clytia hemisphaericaexon
TCONS_00043952-exon-sc0004762-1575043694:3087..3490TCONS_00043952-exon-sc0004762-1575043694:3087..3490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004762supercontigsc0004762:3087..3490 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.205999	0	1.96282	0.775523	0	0.437965	0.30663	0.189905	0	0.121169	0	0	0.10331	0.110867	0	0	0	0	0	0	0.208606	0.189653	1.17203	1.04601	0.249472	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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