TCONS_00043949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043949
Unique NameTCONS_00043949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043949 ID=TCONS_00043949|Name=TCONS_00043949|organism=Clytia hemisphaerica|type=transcript|length=782bp
TGTACCTGGCGTTTATCCCTTGCTGTTCAAATAATTTGCATTTGTCACCT
GCTGTACACACAGTGGAGAATCTACGAAAACGCACCTCCATAAACTGAAC
GAGACTTTCGAACAACATGGATGGTCAGATATGTCGAGCGTACGCCACTT
GTGCGCGTGCGAACAAAATATGGACGCGCACCTCATCAGACGACGTTTAT
CCGTGAACCGGTTTGCGTTGAGTACAACGGCCGAATTGTTCGGTGTTGTC
GGTGTACCTTCAATCATGGTTATCGATAAAGACGGTATGATCTCATGGCA
AGGACGTTATTGCGCACTGAACTATAACTCCTTCTCCCTTTTCATGCGAC
ACTTATACAGCACCGTCATGCGTTTACCGTGCGACGTTCATGATTGCGTC
ACGTGTTCTGCGGAAGCTCACCAAGACTTTAAACACACTGAAGATTTACT
TCCTTCTCAAGGTGCAGAGTCTACCACCTACAAACCCAACTTATTCCCCG
CTTTCACACCAAGCGGACGCAGCAAGAAAgacattaaaaagaaattaaaa
tccaGACACCGTGGTGCTTCAGATAAAGGCTCTTCACCGCGGGAGCTGGC
GATGAGACACATTGCCATGGCAACCACGCCACGCGTGCAAAATCCTTACG
AGGAAGAATTCATAGAGGAAATTTTCCTCCCAAAGGAAACAAAAACGAAT
AAGGGTTCAGGTAAGGGCGCTAAGAGCGCCCTATTTCCCTACATTCCTCA
ATCACCACCCACCCGCCCGAAAAGAATTCGAA
Run BLAST on NCBI

transcript from alignment at sc0004762:1..1115-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043949 ID=TCONS_00043949|Name=TCONS_00043949|organism=Clytia hemisphaerica|type=transcript|length=1115bp|location=Sequence derived from alignment at sc0004762:1..1115- (Clytia hemisphaerica)
TGTACCTGGCGTTTATCCCTTGCTGTTCAAATAAGTAAATATTGTTTGTT
TTGATAGTTATATGTGTGCAGAATTGTAGTGTTTCAGAAAAATCAAAAAA
AGCAACAAAAAAAAACAAACATATCATTAAAACTTTTATCAATAAAATAA
AATTTACTTGACCGTTATTATCTCCTTTATCTACAGTTTGCATTTGTCAC
CTGCTGTACACACAGTGGAGAATCTACGAAAACGCACCTCCATAAACTGA
ACGAGACTTTCGAACAACATGGATGGTCAGATATGTCGAGCGTACGCCAC
TTGTGCGCGTGCGAACAAAATATGGACGCGCACCTCATCAGACGACGTTT
ATCCGTGAACCGGTTTGCGTTGAGTACAACGGCCGAATTGTTCGGTGTTG
TCGGTGTACCTTCAATCATGGTTATCGATAAAGACGGTACGTTTTCGTCT
CACTTTGGGGTTGTATCATCATTTGACAAGATCGTACAGAGTATTCCCAA
CTTATGCAGCGAAAGTTACACCAAATCTTTTATGAAATATTCATGAAAGC
ATAAACCTTGCTTTACTTTTGAAACTCTCAATAATAATTCTGTTAAATTT
TTTTTCATCTTTCTCAGGTATGATCTCATGGCAAGGACGTTATTGCGCAC
TGAACTATAACTCCTTCTCCCTTTTCATGCGACACTTATACAGCACCGTC
ATGCGTTTACCGTGCGACGTTCATGATTGCGTCACGTGTTCTGCGGAAGC
TCACCAAGACTTTAAACACACTGAAGATTTACTTCCTTCTCAAGGTGCAG
AGTCTACCACCTACAAACCCAACTTATTCCCCGCTTTCACACCAAGCGGA
CGCAGCAAGAAAGACATTAAAAAGAAATTAAAATCCAGACACCGTGGTGC
TTCAGATAAAGGCTCTTCACCGCGGGAGCTGGCGATGAGACACATTGCCA
TGGCAACCACGCCACGCGTGCAAAATCCTTACGAGGAAGAATTCATAGAG
GAAATTTTCCTCCCAAAGGAAACAAAAACGAATAAGGGTTCAGGTAAGGG
CGCTAAGAGCGCCCTATTTCCCTACATTCCTCAATCACCACCCACCCGCC
CGAAAAGAATTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027613XLOC_027613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043949-exon-sc0004762-1575043694:1082..1115TCONS_00043949-exon-sc0004762-1575043694:1082..1115Clytia hemisphaericaexon
TCONS_00043949-exon-sc0004762-1575043694:680..929TCONS_00043949-exon-sc0004762-1575043694:680..929Clytia hemisphaericaexon
TCONS_00043949-exon-sc0004762-1575043694:1..498TCONS_00043949-exon-sc0004762-1575043694:1..498Clytia hemisphaericaexon
TCONS_00043949-exon-sc0004762-1510915933:1082..1115TCONS_00043949-exon-sc0004762-1510915933:1082..1115Clytia hemisphaericaexon
TCONS_00043949-exon-sc0004762-1510915933:680..929TCONS_00043949-exon-sc0004762-1510915933:680..929Clytia hemisphaericaexon
TCONS_00043949-exon-sc0004762-1510915933:1..498TCONS_00043949-exon-sc0004762-1510915933:1..498Clytia hemisphaericaexon
TCONS_00043949-exon-sc0004762-1491911889:1082..1115TCONS_00043949-exon-sc0004762-1491911889:1082..1115Clytia hemisphaericaexon
TCONS_00043949-exon-sc0004762-1491911889:680..929TCONS_00043949-exon-sc0004762-1491911889:680..929Clytia hemisphaericaexon
TCONS_00043949-exon-sc0004762-1491911889:1..498TCONS_00043949-exon-sc0004762-1491911889:1..498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004762supercontigsc0004762:1..1115 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.995217	2.66811	1.10923	0.0658076	13.6467	6.08741	3.37249	4.49849	4.27323	4.07071	1.89381	5.02403	4.09925	5.04844	1.73173	2.83158	1.11945	4.30714	16.7739	15.1074	3.40856	3.5279	6.31344	3.67663	4.31017	1.60959	1.70606	3.31093	3.5989	4.68344
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top