TCONS_00043946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043946
Unique NameTCONS_00043946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043946 ID=TCONS_00043946|Name=TCONS_00043946|organism=Clytia hemisphaerica|type=transcript|length=766bp
tcccaaggcgccgagtatgcacccggcacagtgacaagccgttactagca
accctgaccctacctccctataccccctgaatcacggaatgacggatagg
aaaaattattgaaaaaaatgcttGTCGCGCTCTGACTAATCAGCAAAATC
TTCTCTGCTGACTCTCCACCATCTTGATGTGGTCTAGCTCTATACTTTCT
CAGTCGCGCTCGATTTCCTCCTTTCACTTTCGACCTTTCAATCTCCTCCA
GAACTACATTGAGATCCCAAGGTTGAGCCTTACTAAAGCACTTCCGATCC
TAACTTTTTGTCCCATNGCGCTCGATTTCCTCCTTTCACTTTCGACTTTT
CAATCTCCTCCAGAACAACATTGAGATCCCAAGGTTGAGCCTTACTAAAG
CACTTCCGACCCTAACTTTTTGTCCCATTTCATACCTTAGGAACCTTTTA
CGATTCCATCATGCTGCACTTGATTCCTTCCTTTCCTAGGTTCTATTCAT
TTCTCTCTCACTTTCAGTTTTTGAACTTCTTTCAGTCAGCTCTAAGGTCT
CATGTTTAAACAACCCTACTATAGATACTTTCAACTTCAACTGATCTCAA
ACAGCAACATTTCACTGCACCATTATATCGTCCACACACCCCAAACTCTG
CTTAACTTGGTCTCTGCTACATTTCGCGAAATGCTCAGAGcgtgttatta
taatatgggtaaaagtactcCCCTTtaaaacctgactgaaattcgagccg
ttactagcaaccctgc
Run BLAST on NCBI

transcript from alignment at sc0004757:4340..5105

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043946 ID=TCONS_00043946|Name=TCONS_00043946|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at sc0004757:4340..5105 (Clytia hemisphaerica)
gcagggttgctagtaacggctcgaatttcagtcaggttttaAAGGGgagt
acttttacccatattataataacacgCTCTGAGCATTTCGCGAAATGTAG
CAGAGACCAAGTTAAGCAGAGTTTGGGGTGTGTGGACGATATAATGGTGC
AGTGAAATGTTGCTGTTTGAGATCAGTTGAAGTTGAAAGTATCTATAGTA
GGGTTGTTTAAACATGAGACCTTAGAGCTGACTGAAAGAAGTTCAAAAAC
TGAAAGTGAGAGAGAAATGAATAGAACCTAGGAAAGGAAGGAATCAAGTG
CAGCATGATGGAATCGTAAAAGGTTCCTAAGGTATGAAATGGGACAAAAA
GTTAGGGTCGGAAGTGCTTTAGTAAGGCTCAACCTTGGGATCTCAATGTT
GTTCTGGAGGAGATTGAAAAGTCGAAAGTGAAAGGAGGAAATCGAGCGCN
ATGGGACAAAAAGTTAGGATCGGAAGTGCTTTAGTAAGGCTCAACCTTGG
GATCTCAATGTAGTTCTGGAGGAGATTGAAAGGTCGAAAGTGAAAGGAGG
AAATCGAGCGCGACTGAGAAAGTATAGAGCTAGACCACATCAAGATGGTG
GAGAGTCAGCAGAGAAGATTTTGCTGATTAGTCAGAGCGCGACaagcatt
tttttcaataatttttcctatccgtcattccgtgattcagggggtatagg
gaggtagggtcagggttgctagtaacggcttgtcactgtgccgggtgcat
actcggcgccttggga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027610XLOC_027610Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043946-exon-sc0004757-1491911889:4340..5105TCONS_00043946-exon-sc0004757-1491911889:4340..5105Clytia hemisphaericaexon
TCONS_00043946-exon-sc0004757-1510915933:4340..5105TCONS_00043946-exon-sc0004757-1510915933:4340..5105Clytia hemisphaericaexon
TCONS_00043946-exon-sc0004757-1575043694:4340..5105TCONS_00043946-exon-sc0004757-1575043694:4340..5105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004757supercontigsc0004757:4340..5105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0637835	0	0.417803	0.187074	0	0.204177	0.0833474	0	0	0	0	0.113416	0	0	0	0.0779855	0.0960048	0.0491887	0.0685752	0.0716845	0.065368	0.195872	0	0.177437	0	0.122452	0.0881484	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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