TCONS_00043938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043938
Unique NameTCONS_00043938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length990

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043938 ID=TCONS_00043938|Name=TCONS_00043938|organism=Clytia hemisphaerica|type=transcript|length=990bp
CTTTCTTTAACAATAAAGCAATGCTCACCTTTACGACCGAATCCAGAGAC
GAGAACTTCATCGTTTTCTTCAATGTAGTTCAAACAACCATCGTTAGGAA
CGAAAGCAGTGATTTTCTTTCCGTTCTTGATAAGTTGTACACGAACACAT
TTTCGGATGGCAGAGTTAGGTTGTTTAGCTTCAACACCActaaaaggaaa
taaaaattaaattagtATGTACAGGTGACGTGGGCTTTGTTTAGACAACA
TATACCTCCTATACCTTGATAAGATGAATTTTCTCAATTGTCATGAATTG
TCCTTTTTCACGAAAATTAAGTCCTTGCAAAAATTTTGGAGCCTGTCGAT
TAGCGAAAATAAGTCAACGTAAAATTTCCAATTGTACAAAAAATGAGCGA
AACTTAAATACAATCAATGAAATTTCCccaattttcagcatttttcaaCT
TCTTTGGCCAAACTTTAcctttaaaaatgtaaaaatagcAGTTGAGTAAC
CAACATGTTACCAATATTTCCAATTTAGAAATCACTAAATgcctttttgc
aaaaatttatgCATGCTTATGTAGTTgaaatgttcaaaaaagatgTTTTC
ATTCAGGTGGCCGATTAATCTGGCTTTTGGCAATTTGACCAGGCCTATCA
GTGAATAGGAATGAATATTTGTTTATTCTATGAATGCTCTAGCACTGGCA
TAAAAAGATTGGTATTTTATACAGTGACTCTAGCTTCAACTCAAttcatt
aaaattcaaaatatttattggaCAGCctaatctttgcttggaaagattaa
aaaaaattcttTATTTTCTGGGTCATCTGCAAACGACGGAGGGTCACTTT
CAAgagttttttttataatgacattTGAAAATGCACATTAAATCAAGAGA
GACATATGCACGCTTTCtgtttataagaatggtgtaaatccattacatag
atatttttaacttttttaggaaaatcatcctaaaatattc
Run BLAST on NCBI

transcript from alignment at sc0004748:4774..5763-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043938 ID=TCONS_00043938|Name=TCONS_00043938|organism=Clytia hemisphaerica|type=transcript|length=990bp|location=Sequence derived from alignment at sc0004748:4774..5763- (Clytia hemisphaerica)
CTTTCTTTAACAATAAAGCAATGCTCACCTTTACGACCGAATCCAGAGAC
GAGAACTTCATCGTTTTCTTCAATGTAGTTCAAACAACCATCGTTAGGAA
CGAAAGCAGTGATTTTCTTTCCGTTCTTGATAAGTTGTACACGAACACAT
TTTCGGATGGCAGAGTTAGGTTGTTTAGCTTCAACACCACTAAAAGGAAA
TAAAAATTAAATTAGTATGTACAGGTGACGTGGGCTTTGTTTAGACAACA
TATACCTCCTATACCTTGATAAGATGAATTTTCTCAATTGTCATGAATTG
TCCTTTTTCACGAAAATTAAGTCCTTGCAAAAATTTTGGAGCCTGTCGAT
TAGCGAAAATAAGTCAACGTAAAATTTCCAATTGTACAAAAAATGAGCGA
AACTTAAATACAATCAATGAAATTTCCCCAATTTTCAGCATTTTTCAACT
TCTTTGGCCAAACTTTACCTTTAAAAATGTAAAAATAGCAGTTGAGTAAC
CAACATGTTACCAATATTTCCAATTTAGAAATCACTAAATGCCTTTTTGC
AAAAATTTATGCATGCTTATGTAGTTGAAATGTTCAAAAAAGATGTTTTC
ATTCAGGTGGCCGATTAATCTGGCTTTTGGCAATTTGACCAGGCCTATCA
GTGAATAGGAATGAATATTTGTTTATTCTATGAATGCTCTAGCACTGGCA
TAAAAAGATTGGTATTTTATACAGTGACTCTAGCTTCAACTCAATTCATT
AAAATTCAAAATATTTATTGGACAGCCTAATCTTTGCTTGGAAAGATTAA
AAAAAATTCTTTATTTTCTGGGTCATCTGCAAACGACGGAGGGTCACTTT
CAAGAGTTTTTTTTATAATGACATTTGAAAATGCACATTAAATCAAGAGA
GACATATGCACGCTTTCTGTTTATAAGAATGGTGTAAATCCATTACATAG
ATATTTTTAACTTTTTTAGGAAAATCATCCTAAAATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027602XLOC_027602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043938-exon-sc0004748-1575043694:4774..5763TCONS_00043938-exon-sc0004748-1575043694:4774..5763Clytia hemisphaericaexon
TCONS_00043938-exon-sc0004748-1510915933:4774..5763TCONS_00043938-exon-sc0004748-1510915933:4774..5763Clytia hemisphaericaexon
TCONS_00043938-exon-sc0004748-1491911889:4774..5763TCONS_00043938-exon-sc0004748-1491911889:4774..5763Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004748supercontigsc0004748:4774..5763 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
249.071	258.077	281.908	316.965	325.411	244.8	503.72	509.303	541.772	487.052	511.036	583.65	643.927	544.605	645.17	624.768	642.398	700.205	315.375	341.285	419.221	414.982	330.737	296.19	443.922	454.691	431.469	424.712	286.634	292.446
Blast
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BLAST of TCONS_00043938 vs. Swiss-Prot (Human)
Match: RS23 (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 8.671e-29
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = -2 
Query:   24 GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVSGFGRKGE 188
            GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN+IEENDEVLV+GFGRKG 
Sbjct:   56 GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGH 110
The following BLAST results are available for this feature:
BLAST of TCONS_00043938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS238.671e-2994.5540S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
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