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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043929 ID=TCONS_00043929|Name=TCONS_00043929|organism=Clytia hemisphaerica|type=transcript|length=1160bp
CAATTAAAACAGAATCTGCTTTTtaggaaaaaatcttcaaaagaatataa
aatgttttcaaatagtAAAATAGTATAAACAAAATATAAAGATGCCGCGG
GATTGATTAATAATGGTCTATGGTCAGTTATTTTGCAAACGATGAGCAAT
TTTTCTCTTTCCTGACTTTGTACCGTCTGCCTCAAACCACTTTTTAAGAA
TAGAAGAGAAATCCTCTTCATTCAATTTTCTGAACTTGCATATTCGCATG
CAAGCTCCCAAGTTTTCTGGTGTGAGCCTATTTCTCAGCTTGGTACATAT
GAGTTTCATTAAGCTGAAGGATCGTTCGACCTCAGCTGTAGAGGGTGGAA
TGAGTGCTGCCAAGTTTAGTATCCTGCTTAGTTCAGGATGGCGAGATTGG
AATCCCGATTCTACCCATTGCTTTAACATGATTTCAAAAGTGTATTTCTT
TGTCTTCTCCAGTTCTTCAATTCGATTTTCGTAAGTTTTAATGTTCTTGT
CGAGCTTTATAATTTTTCGTTTGCTGTAGATTGAAGATAAGGTggctttc
tttttttcttcaccatTTAACTTTATTTTAGCTGTTTCTAATTCTGATTC
CCGTTCCGTTTCCCATTCCAATCGCTTTTTGAAGACAAATTTCTTGAAAC
CCTCGTATTGAGTAATTAGACTCGTCGCATTAATGATAGGCGGTTTTTCC
AAGGATGGAGATCCGTAAAATTGAGATATCGATTCGATTTCACTTTTACC
GTAGCTTGCTAATTCTTCTTCCGTCTGTGGAATTTGAGCTGGATCAAGTG
CTGTAAAACCTTTCAAATGTTCTGGAATGTTAAAAGCTATCTCGATTTCA
TCTACTAGCTTTGAGATGAAAGGTTTGATGACCTtatcttcaaaagatgt
agGGTCAAAGGCTTTGTTTGAACGAGATTCGTAACGCCCTTCCGCTGATT
GTTTTGCAATATCAAGAAACGATTCAAGTTTGCCGAAATATGAATCAATA
AGGGCAGATGGGCTGTTATATTTAGCGTTCAacttttcaattaatttttc
tttctctctggGTATATCCAAGAAATTGAGCCGTGAAGACTGTAGAAATC
TTTGCATTGTGTTTGTCATCATAATTACATCAGTTAAAATGCAAAGAGTA
GCTATTGTGN Run BLAST on NCBI protein sequence of TCONS_00043929-protein >TCONS_00043929-protein ID=TCONS_00043929-protein|Name=TCONS_00043929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
TIATLCILTDVIMMTNTMQRFLQSSRLNFLDIPREKEKLIEKLNAKYNSP
SALIDSYFGKLESFLDIAKQSAEGRYESRSNKAFDPTSFEDKVIKPFISK
LVDEIEIAFNIPEHLKGFTALDPAQIPQTEEELASYGKSEIESISQFYGS
PSLEKPPIINATSLITQYEGFKKFVFKKRLEWETERESELETAKIKLNGE
EKKKATLSSIYSKRKIIKLDKNIKTYENRIEELEKTKKYTFEIMLKQWVE
SGFQSRHPELSRILNLAALIPPSTAEVERSFSLMKLICTKLRNRLTPENL
GACMRICKFRKLNEEDFSSILKKWFEADGTKSGKRKIAHRLQNN Run BLAST on NCBI transcript from alignment at sc0004741:3983..5142 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043929 ID=TCONS_00043929|Name=TCONS_00043929|organism=Clytia hemisphaerica|type=transcript|length=1160bp|location=Sequence derived from alignment at sc0004741:3983..5142 (Clytia hemisphaerica)
NCACAATAGCTACTCTTTGCATTTTAACTGATGTAATTATGATGACAAAC
ACAATGCAAAGATTTCTACAGTCTTCACGGCTCAATTTCTTGGATATACc
cagagagaaagaaaaattaattgaaaagtTGAACGCTAAATATAACAGCC
CATCTGCCCTTATTGATTCATATTTCGGCAAACTTGAATCGTTTCTTGAT
ATTGCAAAACAATCAGCGGAAGGGCGTTACGAATCTCGTTCAAACAAAGC
CTTTGACCctacatcttttgaagataAGGTCATCAAACCTTTCATCTCAA
AGCTAGTAGATGAAATCGAGATAGCTTTTAACATTCCAGAACATTTGAAA
GGTTTTACAGCACTTGATCCAGCTCAAATTCCACAGACGGAAGAAGAATT
AGCAAGCTACGGTAAAAGTGAAATCGAATCGATATCTCAATTTTACGGAT
CTCCATCCTTGGAAAAACCGCCTATCATTAATGCGACGAGTCTAATTACT
CAATACGAGGGTTTCAAGAAATTTGTCTTCAAAAAGCGATTGGAATGGGA
AACGGAACGGGAATCAGAATTAGAAACAGCTAAAATAAAGTTAAatggtg
aagaaaaaaagaaagccACCTTATCTTCAATCTACAGCAAACGAAAAATT
ATAAAGCTCGACAAGAACATTAAAACTTACGAAAATCGAATTGAAGAACT
GGAGAAGACAAAGAAATACACTTTTGAAATCATGTTAAAGCAATGGGTAG
AATCGGGATTCCAATCTCGCCATCCTGAACTAAGCAGGATACTAAACTTG
GCAGCACTCATTCCACCCTCTACAGCTGAGGTCGAACGATCCTTCAGCTT
AATGAAACTCATATGTACCAAGCTGAGAAATAGGCTCACACCAGAAAACT
TGGGAGCTTGCATGCGAATATGCAAGTTCAGAAAATTGAATGAAGAGGAT
TTCTCTTCTATTCTTAAAAAGTGGTTTGAGGCAGACGGTACAAAGTCAGG
AAAGAGAAAAATTGCTCATCGTTTGCAAAATAACTGACCATAGACCATTA
TTAATCAATCCCGCGGCATCTTTATATTTTGTTTATACTATTTTactatt
tgaaaacattttatattcttttgaagattttttcctaAAAAGCAGATTCT
GTTTTAATTG Coding sequence (CDS) from alignment at sc0004741:3983..5142 >TCONS_00043929 ID=TCONS_00043929|Name=TCONS_00043929|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0004741:3983..5142 (Clytia hemisphaerica)
ACAATAGCTACTCTTTGCATTTTAACTGATGTAATTATGATGACAAACAC
AATGCAAAGATTTCTACAGTCTTCACGGCTCAATTTCTTGGATATACcca
gagagaaagaaaaattaattgaaaagtTGAACGCTAAATATAACAGCCCA
TCTGCCCTTATTGATTCATATTTCGGCAAACTTGAATCGTTTCTTGATAT
TGCAAAACAATCAGCGGAAGGGCGTTACGAATCTCGTTCAAACAAAGCCT
TTGACCctacatcttttgaagataAGGTCATCAAACCTTTCATCTCAAAG
CTAGTAGATGAAATCGAGATAGCTTTTAACATTCCAGAACATTTGAAAGG
TTTTACAGCACTTGATCCAGCTCAAATTCCACAGACGGAAGAAGAATTAG
CAAGCTACGGTAAAAGTGAAATCGAATCGATATCTCAATTTTACGGATCT
CCATCCTTGGAAAAACCGCCTATCATTAATGCGACGAGTCTAATTACTCA
ATACGAGGGTTTCAAGAAATTTGTCTTCAAAAAGCGATTGGAATGGGAAA
CGGAACGGGAATCAGAATTAGAAACAGCTAAAATAAAGTTAAatggtgaa
gaaaaaaagaaagccACCTTATCTTCAATCTACAGCAAACGAAAAATTAT
AAAGCTCGACAAGAACATTAAAACTTACGAAAATCGAATTGAAGAACTGG
AGAAGACAAAGAAATACACTTTTGAAATCATGTTAAAGCAATGGGTAGAA
TCGGGATTCCAATCTCGCCATCCTGAACTAAGCAGGATACTAAACTTGGC
AGCACTCATTCCACCCTCTACAGCTGAGGTCGAACGATCCTTCAGCTTAA
TGAAACTCATATGTACCAAGCTGAGAAATAGGCTCACACCAGAAAACTTG
GGAGCTTGCATGCGAATATGCAAGTTCAGAAAATTGAATGAAGAGGATTT
CTCTTCTATTCTTAAAAAGTGGTTTGAGGCAGACGGTACAAAGTCAGGAA
AGAGAAAAATTGCTCATCGTTTGCAAAATAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043929-exon-sc0004741-1491911889:3983..5142 | TCONS_00043929-exon-sc0004741-1491911889:3983..5142 | Clytia hemisphaerica | exon |
| TCONS_00043929-exon-sc0004741-1510915933:3983..5142 | TCONS_00043929-exon-sc0004741-1510915933:3983..5142 | Clytia hemisphaerica | exon |
| TCONS_00043929-exon-sc0004741-1575043694:3983..5142 | TCONS_00043929-exon-sc0004741-1575043694:3983..5142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004741 | supercontig | sc0004741:3983..5142 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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