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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043927 ID=TCONS_00043927|Name=TCONS_00043927|organism=Clytia hemisphaerica|type=transcript|length=1052bp
acttttttactaCCGTATACcggcaaaaatactcaatccaagattgagtt
atgaaactcaatccaaaatataaaaaaaaattcaaaagtagaactttaaa
aagttttaaagtaGTTTTCTCAGAAACGCCCATTATTTGTTTTTAATCAG
TGTAGAGAGTAAAGACAAGAGAATGGAAAAATTTGTTCTCTCGTAATGTT
TCTTGGTACGCAGTCACGTCATAAATTcgatgtgtttcattgttttcatc
aGATAATTCATTCATTGCTatgttttaaaaacttttttgtttttcactaC
ACCCTTTTATCTATCCGGTGTTTACTAAAAGTAAATTCTTGAGGGTGAGA
TATTTATTGATCTTttcaaggaagaaaaaattagagAGAGCTTGATTGTT
CTTTCTTTGTTTCGATGTAACAGTCTAGGTATTAAAAGACGAGtggtttt
tcttgaaaagaaaaaaaaatttaattgatttGAATTTATGCACCATATAA
GTCGAAACGCTTTCTGTTTAGAAAAGAttaatttgataaaaactaAATGA
AAGATGGGAAAGACCGCAGGAAAGGTATCAACGCAAAAAGGTACAAAACA
CCAATATCCAGCAACGCGTAAAAGTTACACACATAGTCGAAAAGGAATTG
GTGGTagaaaaaagaaacaagaaaGGATTCTAAAACCTGCAAAGAAAACT
TATTTTGATGAGCTTCTACAAAGGCAGAAAGAGAAAGATCAATCACTCGC
CAGTTGCTCGAAGGAAAGTGGCTTAAATGAAGAACAAAATCCAGAGAGCA
TATCAGATGACGAAAGTTCTAGCAACACAAAAACCGATACTGAAGAAGAT
GAATGGTATAACGAAAATGTCagcgaagaagaagaagaaggtgATTCAAA
GCTAGAATCAGGAAGTGACTCAGAGCTTGAAAGATCAGAAATTGATTCAA
ATAACAACTACGCAGGACCTGAGGATGGTTTGGATATTTCCACTTCTAGC
AAGATCGATTACAGAAACTTTCGCCTGGGACCTTACGTAGAACAATTTCC
TT Run BLAST on NCBI protein sequence of TCONS_00043927-protein >TCONS_00043927-protein ID=TCONS_00043927-protein|Name=TCONS_00043927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MGKTAGKVSTQKGTKHQYPATRKSYTHSRKGIGGRKKKQERILKPAKKTY
FDELLQRQKEKDQSLASCSKESGLNEEQNPESISDDESSSNTKTDTEEDE
WYNENVSEEEEEGDSKLESGSDSELERSEIDSNNNYAGPEDGLDISTSSK
IDYRNFRLGPYVEQFP Run BLAST on NCBI transcript from alignment at sc0004741:23..2227+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043927 ID=TCONS_00043927|Name=TCONS_00043927|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at sc0004741:23..2227+ (Clytia hemisphaerica)
acttttttactaCCGTATACcggcaaaaatactcaatccaagattgagtt
atgaaactcaatccaaaatataaaaaaaaattcaaaagtagaactttaaa
aagttttaaagtaGTTTTCTCAGAAACGCCCATTATTTGTTTTTAATCAG
TGTAGAGAGTAAAGACAAGAGAATGGAAAAATTTGTTCTCTCGTAATGTT
TCTTGGTACGCAGTCACGTCATAAATTcgatgtgtttcattgttttcatc
aGATAATTCATTCATTGCTatgttttaaaaacttttttgtttttcactaC
ACCCTTTTATCTATCCGGTGTTTACTAAAAGTAAATTCTTGAGGGTGAGA
TATTTATTGATCTTttcaaggaagaaaaaattagagAGAGCTTGATTGTT
CTTTCTTTGTTTCGATGTAACAGTCTAGGTATTAAAAGACGAGtggtttt
tcttgaaaagaaaaaaaaatttaattgatttGAATTTATGCACCATATAA
GTCGAAACGCTTTCTGTTTAGAAAAGAttaatttgataaaaactaAATGA
AAGATGGGAAAGACCGCAGGAAAGGTATCAACGCAAAAAGGTACAAAACA
CCAATATCCAGCAACGCGTAAAAGTTACACACATAGTCGAAAAGGAATTG
GTGGTagaaaaaagaaacaagaaaGGATTCTAAAACCTGCAAAGAAAACT
TATTTTGATGAGCTTCTACAAAGGCAGAAAGAGAAAGGTtagttttttat
atatttcttttAGATAATAGAAGTTCCTTGCTATGTTCCACCATCCGTAT
CAGGGTTCTAAATTCCATCGCTATAATTTATAACGAATTGGAGTGTGACA
TTGACCGTTACTATACATTCCGTTACATTCAGAGTGTATTCGTCATCTTT
TATTACTATAACTAcgctttttcaaatataattaattaaaaaaatatcct
tTTCTAATGCAGATCAATCACTCGCCAGTTGCTCGAAGGAANGTATCCGG
TGTTTACTAAAAATAAATTCTTGAGGGTGAGATATTTATTGATCTTttca
aggaagaaaaaattagagAGAGCTTGATTGTTCTTTCTTTGTTTCGATGT
AACAGTCTAGGTATTAAAAGACGAGtggtttttcttgaaaagaaaaaaaa
atttaattgatttGAATTTATGCACCATATAAGTCGAAACGCTTTCTGTT
TAGAAAAGAttaatttgataaaaactaAATGAAAGATGGGAAAGACCGCA
GGAAAGGTATCAACGCAAAAAGGTACAAAACACCAATATCCAGCAACGCG
TAAAAGTTACACACATAGTCGAAAAGGAATTGGTGGTagaaaaaagaaac
aagaaaGGATTCTAAAACCTGCAAAGAAAACTTATTTTGATGAGCTTCTA
CAAAGGCAGAAAGAGAAAGGTtagttttttatatatttcttttAGATAAT
AGAAGTTCCTTGCTATGTTCCACCATCCGTATCAGGGTTCTAAATTCCAT
CGCTATAATTTATAACGAATTGGAGTGTGACATTGACCGTTACTATACAT
TCCGTTACATTCAGAGTGTATTCGTCATCTTTTATTACTATAACTAcgct
ttttcaaatataattaattaaaaaaatatccttTTCTAATGCAGATCAAT
CACTCGCCAGTTGCTCGAAGGAAAGTGGCTTAAATGAAGAACAAAATCCA
GAGAGgtattcaattttttcgctATTAAAACGTTTAGAACGTTTTTAACA
ATTTAGAAAGCTCTTTATACTGCTCAGTAGAGTTCAAAGCCTAGGGTTAA
AAATAGGATTGATGTAAAGTATCATCTATAATTATTCATTCGTTCCCGTC
AGTAAATAGCTGAAAAGCACTTTCtcactcaaaataattctatCAACAGT
GGTAGTCTGATAATGTAACTTTTTCAAGACCGTTATACTAATTCTTTATA
GCATATCAGATGACGAAAGTTCTAGCAACACAAAAACCGATACTGAAGAA
GATGAATGGTATAACGAAAATGTCagcgaagaagaagaagaaggtgATTC
AAAGCTAGAATCAGGAAGTGACTCAGAGCTTGAAAGATCAGAAATTGATT
CAAATAACAACTACGCAGGACCTGAGGATGGTTTGGATATTTCCACTTCT
AGCAAGATCGATTACAGAAACTTTCGCCTGGGACCTTACGTAGAACAATT
TCCTT Coding sequence (CDS) from alignment at sc0004741:23..2227+ >TCONS_00043927 ID=TCONS_00043927|Name=TCONS_00043927|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0004741:23..2227+ (Clytia hemisphaerica)
ATGGGAAAGACCGCAGGAAAGGTATCAACGCAAAAAGGTACAAAACACCA
ATATCCAGCAACGCGTAAAAGTTACACACATAGTCGAAAAGGAATTGGTG
GTagaaaaaagaaacaagaaaGGATTCTAAAACCTGCAAAGAAAACTTAT
TTTGATGAGCTTCTACAAAGGCAGAAAGAGAAAGATCAATCACTCGCCAG
TTGCTCGAAGGAAAGTGGCTTAAATGAAGAACAAAATCCAGAGAGCATAT
CAGATGACGAAAGTTCTAGCAACACAAAAACCGATACTGAAGAAGATGAA
TGGTATAACGAAAATGTCagcgaagaagaagaagaaggtgATTCAAAGCT
AGAATCAGGAAGTGACTCAGAGCTTGAAAGATCAGAAATTGATTCAAATA
ACAACTACGCAGGACCTGAGGATGGTTTGGATATTTCCACTTCTAGCAAG
ATCGATTACAGAAACTTTCGCCTGGGACCTTACGTAGAACAATTTCCTAT
GGGAAAGACCGCAGGAAAGGTATCAACGCAAAAAGGTACAAAACACCAAT
ATCCAGCAACGCGTAAAAGTTACACACATAGTCGAAAAGGAATTGGTGGT
agaaaaaagaaacaagaaaGGATTCTAAAACCTGCAAAGAAAACTTATTT
TGATGAGCTTCTACAAAGGCAGAAAGAGAAAGATCAATCACTCGCCAGTT
GCTCGAAGGAAAGTGGCTTAAATGAAGAACAAAATCCAGAGAGCATATCA
GATGACGAAAGTTCTAGCAACACAAAAACCGATACTGAAGAAGATGAATG
GTATAACGAAAATGTCagcgaagaagaagaagaaggtgATTCAAAGCTAG
AATCAGGAAGTGACTCAGAGCTTGAAAGATCAGAAATTGATTCAAATAAC
AACTACGCAGGACCTGAGGATGGTTTGGATATTTCCACTTCTAGCAAGAT
CGATTACAGAAACTTTCGCCTGGGACCTTACGTAGAACAATTTCCTATGG
GAAAGACCGCAGGAAAGGTATCAACGCAAAAAGGTACAAAACACCAATAT
CCAGCAACGCGTAAAAGTTACACACATAGTCGAAAAGGAATTGGTGGTag
aaaaaagaaacaagaaaGGATTCTAAAACCTGCAAAGAAAACTTATTTTG
ATGAGCTTCTACAAAGGCAGAAAGAGAAAGATCAATCACTCGCCAGTTGC
TCGAAGGAAAGTGGCTTAAATGAAGAACAAAATCCAGAGAGCATATCAGA
TGACGAAAGTTCTAGCAACACAAAAACCGATACTGAAGAAGATGAATGGT
ATAACGAAAATGTCagcgaagaagaagaagaaggtgATTCAAAGCTAGAA
TCAGGAAGTGACTCAGAGCTTGAAAGATCAGAAATTGATTCAAATAACAA
CTACGCAGGACCTGAGGATGGTTTGGATATTTCCACTTCTAGCAAGATCG
ATTACAGAAACTTTCGCCTGGGACCTTACGTAGAACAATTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043927-exon-sc0004741-1491911889:23..759 | TCONS_00043927-exon-sc0004741-1491911889:23..759 | Clytia hemisphaerica | exon |
| TCONS_00043927-exon-sc0004741-1510915933:23..759 | TCONS_00043927-exon-sc0004741-1510915933:23..759 | Clytia hemisphaerica | exon |
| TCONS_00043927-exon-sc0004741-1575043694:23..759 | TCONS_00043927-exon-sc0004741-1575043694:23..759 | Clytia hemisphaerica | exon |
| TCONS_00043927-exon-sc0004741-1491911889:1667..1727 | TCONS_00043927-exon-sc0004741-1491911889:1667..1727 | Clytia hemisphaerica | exon |
| TCONS_00043927-exon-sc0004741-1510915933:1667..1727 | TCONS_00043927-exon-sc0004741-1510915933:1667..1727 | Clytia hemisphaerica | exon |
| TCONS_00043927-exon-sc0004741-1575043694:1667..1727 | TCONS_00043927-exon-sc0004741-1575043694:1667..1727 | Clytia hemisphaerica | exon |
| TCONS_00043927-exon-sc0004741-1491911889:1974..2227 | TCONS_00043927-exon-sc0004741-1491911889:1974..2227 | Clytia hemisphaerica | exon |
| TCONS_00043927-exon-sc0004741-1510915933:1974..2227 | TCONS_00043927-exon-sc0004741-1510915933:1974..2227 | Clytia hemisphaerica | exon |
| TCONS_00043927-exon-sc0004741-1575043694:1974..2227 | TCONS_00043927-exon-sc0004741-1575043694:1974..2227 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004741 | supercontig | sc0004741:23..2227 + |
Blast
The following BLAST results are available for this feature:
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