TCONS_00043918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043918
Unique NameTCONS_00043918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043918 ID=TCONS_00043918|Name=TCONS_00043918|organism=Clytia hemisphaerica|type=transcript|length=370bp
GGGATACCACTTGTGGAGGAACTATTCTCAGATGGAATTTTAGATGCAGA
GGGAGCAACAGCATCACNTGATATCCCATGGGTCACTTTTTGGTAAAGCA
CAATTCATACCTAAAATTTCTAAGTTAGGAGCACCAGCCTCAATTTGAAC
CTGTTTCAAAACACCTTCCTTGGTCTTCATACTACCAATATCGGACAAAT
TAGTAAAACAAGAATTAGCTTCGATGCAACTTTCAGGATGATTCAGGATG
TCCGGATTGGGTGAATCAATAATAGAAGTATCATTTTCAGCAGACACAGA
GTCATAGAAAGAAACAGTAGCCCTGATATTTGGGATACCACTTGTGGAGG
AACTATTCTCAGATGGAATT
Run BLAST on NCBI

protein sequence of TCONS_00043918-protein

>TCONS_00043918-protein ID=TCONS_00043918-protein|Name=TCONS_00043918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
IPSENSSSTSGIPNIRATVSFYDSVSAENDTSIIDSPNPDILNHPESCIE
ANSCFTNLSDIGSMKTKEGVLKQVQIEAGAPNLEILGMNCALPKSDPWDI
X
Run BLAST on NCBI

transcript from alignment at sc0004731:236..605

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043918 ID=TCONS_00043918|Name=TCONS_00043918|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0004731:236..605 (Clytia hemisphaerica)
AATTCCATCTGAGAATAGTTCCTCCACAAGTGGTATCCCAAATATCAGGG
CTACTGTTTCTTTCTATGACTCTGTGTCTGCTGAAAATGATACTTCTATT
ATTGATTCACCCAATCCGGACATCCTGAATCATCCTGAAAGTTGCATCGA
AGCTAATTCTTGTTTTACTAATTTGTCCGATATTGGTAGTATGAAGACCA
AGGAAGGTGTTTTGAAACAGGTTCAAATTGAGGCTGGTGCTCCTAACTTA
GAAATTTTAGGTATGAATTGTGCTTTACCAAAAAGTGACCCATGGGATAT
CANGTGATGCTGTTGCTCCCTCTGCATCTAAAATTCCATCTGAGAATAGT
TCCTCCACAAGTGGTATCCC

Coding sequence (CDS) from alignment at sc0004731:236..605

>TCONS_00043918 ID=TCONS_00043918|Name=TCONS_00043918|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0004731:236..605 (Clytia hemisphaerica)
ATTCCATCTGAGAATAGTTCCTCCACAAGTGGTATCCCAAATATCAGGGC
TACTGTTTCTTTCTATGACTCTGTGTCTGCTGAAAATGATACTTCTATTA
TTGATTCACCCAATCCGGACATCCTGAATCATCCTGAAAGTTGCATCGAA
GCTAATTCTTGTTTTACTAATTTGTCCGATATTGGTAGTATGAAGACCAA
GGAAGGTGTTTTGAAACAGGTTCAAATTGAGGCTGGTGCTCCTAACTTAG
AAATTTTAGGTATGAATTGTGCTTTACCAAAAAGTGACCCATGGGATATC
ANGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027585XLOC_027585Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043918-proteinTCONS_00043918-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043918-exon-sc0004731-1491911889:236..605TCONS_00043918-exon-sc0004731-1491911889:236..605Clytia hemisphaericaexon
TCONS_00043918-exon-sc0004731-1510915933:236..605TCONS_00043918-exon-sc0004731-1510915933:236..605Clytia hemisphaericaexon
TCONS_00043918-exon-sc0004731-1575043694:236..605TCONS_00043918-exon-sc0004731-1575043694:236..605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004731supercontigsc0004731:236..605 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.10011	0.283731	0	0	0	0	0	0	0.668383	0.434546	0	0	0	0	0	0	0.854666	0.376767	0.844941	0.887804	0	0.299405	0.432028	1.00317	0	0	0	0.721096
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top