TCONS_00043903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043903
Unique NameTCONS_00043903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043903 ID=TCONS_00043903|Name=TCONS_00043903|organism=Clytia hemisphaerica|type=transcript|length=1345bp
TATAGCGTTTACCACAAACTTCACACTTGTAATTTTTGTTACCCTCGTGA
ACTTTACGATGTCTCGATAGATAGACACTGTTTGCAAATGACTTACCACA
TTTCTCGCATTCAAGAGGTTGGAGATCTGTGTGAATACTTACGTGAACAT
TAAATCTGTATTTAGAAGGAAACTCTTTTTTGCAAGTTTgacatttgaat
tttttaatttttttttggtgttttttaatTTGGTGTGATTTAAGATCTCC
TCTTTGAGTAAATCTCTCTCCACATTTTTTACATTTATATTCTTttaatt
tgtgttttcccttatgCAAAGTGAGTTCTGTGGATGTGAACGACTCACCA
CATTCTTGATATTCAATTAATTTGTCAACCTCTTCCTGGATAGTATTTTT
CGNCACATTCTTGATATTCAATTAATTTGTCAACCTCTTCCTGGATACTA
TTTTTATGTAATTGCTTTGAGCTTTCATTTCCAGTTTGAAGGTCTTTTAA
TCGGTTAAAATCGTTACATTGTTCTAAAGATTTTGGGGAGGCTTCATATG
TTTTTGTATCGATTTGAATTTCAACGTCTGCACTtatttcttctttaatt
ttgatgGCACTTTCTTCACCAATTCTAATCTTAAATTTTTGCTCGTGAAC
ATTTCTCTCGATATTTTTAATGTTATTTTCAACATCATAATGAAGCTTGT
CATAATATTGGATTTCAACGTCTGCACTtatttcttctttaattttgatg
GCACTTTCTTCACCAATTCTAATCTTAAATTTTTGCTCGTGAACATTTCT
CTCGATATTTTTAATGTTATTTTCAACATCATAACGAAGCTTGTCATAAT
ATTGGATTTCAACATCTGTACTTATTTCTTCTTTGACTTTGATGGTATTT
TCTTCACCAATTCTAATTCTAAATTTCTCCTCGTGCACATTTTTCTCGat
atttttaatgcttttttccACGTCATCATTGTGAATCTCACCAGTATGCT
TCGGgcgaaacaaaaatttgttaccAACTCCATCAGCAAATTGCAATTGA
TGAAATATATCTTGTATCCAAATATTACATGTACCAATCACACCATCTTC
CATTTGAACATCAAATAAAAGGCTGACTGCTGATTCAGCGTTTTTCTCAT
ACTGATAATTTTCAATCTTAATGTTCATCTTTGTTTAGTTCTCTTTGTCT
TTTGTCTAAGGATAAAAAAGNTCTTCCATTTGAACATCAAATAAAAGGCT
GACTGCTGATTCAGCGTTTTTCTCATACTGATAATTTTCAATCTTAATGT
TCATCTTTGTTTATTTCAAGTAGTTCTCTTTGTCTTTTGTCtaag
Run BLAST on NCBI

transcript from alignment at sc0004714:1583..5708-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043903 ID=TCONS_00043903|Name=TCONS_00043903|organism=Clytia hemisphaerica|type=transcript|length=4126bp|location=Sequence derived from alignment at sc0004714:1583..5708- (Clytia hemisphaerica)
TATAGCGTTTACCACAAACTTCACACTTGTAATTTTTGTTACCCTCGTGA
ACTTTACGATGTCTCGATAGATAGACACTGTTTGCAAATGACTTACCACA
TTTCTCGCATTCAAGAGGTTGGAGATCTGTGTGAATACTTACGTGAACAT
TAAATCTGTATTTAGAAGGAAACTCTTTTTTGCAAGTTTGACATTTGAAT
TTTTTAATTTTTTTTTGGTGTTTTTTAATTTGGTGTGATTTAAGATCTCC
TCTTTGAGTAAATCTCTCTCCACATTTTTTACATTTATATTCTTTTAATT
TGTGTTTTCCCTTATGCAAAGTGAGTTCTGTGGATGTGAACGACTCACCA
CATTCTTGATATTCAATTAATTTGTCAACCTCTTCCTGGATAGTATTTTT
CGNCACATTCTTGATATTCAATTAATTTGTCAACCTCTTCCTGGATACTA
TTTTTATGTAATTGCTTTGAGCTTTCATTTCCAGTTTGAAGGTCTTTTAA
TCGGTTAAAATCGTTACATTGTTCTAAAGATTTTGGGGAGGCTTCATATG
TTTTTGTATCGATTTGAATTTCAACGTCTGCACTTATTTCTTCTTTAATT
TTGATGGCACTTTCTTCACCAATTCTAATCTTAAATTTTTGCTCGTGAAC
ATTTCTCTCGATATTTTTAATGTTATTTTCAACATCATAATGAAGCTTGT
CATAATATTGGATTTCAACATCTGTACTTATTTCTTCTTTGACTTTGATG
GTATTTTCTTCACCGATTCTAATTCTAAATTTCTCCTCGTGCACATTTTT
CTCGATATTTTTAATGCTTTTTTCCACGTCATCATTGTGAATCTCACCAG
GATGCTTCGGGCAAAACAAAAATTTGTTACCAACTCCATCAGCAAATTGC
AATTGATGAAATATATCTTGTATCCAAATATTACATGTACCAATCACACC
ATCTTCCATTTGAACATCAAATAAAAGGCTGACTGCTGATTCAGCGTTAT
TCTCATACTGATAATTTTCAATCTTAATGTTCATCTTTGTTTATTTCAAG
TAGTTCTCTTGTCTTTTGTCTAAGGATAAAAAAAAATTTAAATTATACAA
AAAAAATCAAAGGGTTAATTTCAATTTCAAAATTTTCAAGAAATTTCGAT
GACGTAAGCAGAAATTGCAAAAATTCAATTTTCTGCTATTTCTGATGACG
TCATCAGAAAATTTTAAAATTTTTTCAATCAAAATACTTCTTGAAATATT
GGCTATCATTGGTAAAATTTCATGAAGATTTACGGAGTAGATAGTTCTTG
AGATATTCAATTTTTTTGTTTTATGACGTCATCACAAATGGCCTGAAAAA
CAGGTTTTTAGCCAAAATCACAAAAAAGACAAAAATCAAATATAAGTAAC
AGCGATTTTCATTTTCTACATCGGAATACGCTTGTTTTGATGTATGACTC
ATCAGACTACTAATAATGGGTGCGAACAATTACTGAAAATTTGGACATGC
ATTAATTTACCTGAGACACAGTATTCTTAGGTTAGGATCCAAGTTCCACG
TAAGTTTAACAAGTAATACATAACTGATGAAAAATATTGCATTTTGTGGA
TGTTTTGAGCCTTACTGGGGGATAATTGACAATTTACAGTTAAAAATGCT
TTTAAAATGACATATTTAGGTTCTGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTGAGCATCGAATCGGCCTTTTCTAAAGTAAGATTTATCACACTTACT
ACACTTGAAACACTTGAAACGTTTAATATCTTCGTGAATAGTTTTCTTAT
GAGTCTTAAGGTGAGCTATTGTTGTATAGCTTTTACCACAATCTTCACAC
TTGTATTTGTTACCCTCGTGAACTTTACGATGTCTCGATAGATAAGCATT
GTTTGCAAATGACTTACCACATTCCTTGCATTCAAAAGGTTTGAGACCTG
TGTGAATACTTACGTGAACATTAAAACTGTATTTACAAGGAAACTTTTTT
TTGCAAGTTTGACATTTGAATTTTTTAATTTTTTTTTGGTGTTTTTTATT
TTGGTGTGATTTAAGATCTCCTCTTTGAGTAAATCTCTCTCCACATTTTT
TACATTTATATTCTTTTAATTTGTGTTTTCCCTTATGCAAAGTGAGTTTT
GTGGATGTGAACGACTCACCACATTCTTGATATTCAATTAATTTGTCAAC
CTCTTCCTGGATACTATTTTTATNTCACCACATTCTTGATATTCAATTAA
TTTGTCAACCTCTTCCTGGATACTATTTTTATGTAATTGCTTTGAGCTTT
CATTTCCAGTTTGAAGGTCTTTTAATCGGTTAAAATCGTTACATTGTTCT
AAAGATTTTGGGGAGGCTTCATATGTTTTTGTATCGATTTGAATTTCAAC
GTCTGCACTTATTTCTTCTTTAATTTTGATGGCACTTTCTTCACCAATTC
TAATCTTAAATTTTTGCTCGTGAACATTTCTCTCGATATTTTTAATGTTA
TTTTCAACATCATAACGAAGCTTGTCATAATATTGGATTTCAACATCTGT
ACTTATTTCTTCTTTGACTTTGATGGTATTTTCTTCACCAATTCTAATTC
TAAATTTCTCCTCGTGCACATTTTTCTCGATATTTTTAATGCTTTTTTCC
ACGTCATCATTGTGAATCTCACCAGTATGCTTCGGGCGAAACAAAAATTT
GTTACCAACTCCATCAGCAAATTGCAATTGATGAAATATATCTTGTATCC
AAATATTACATGTACCAATCACACCATCTTCCATTTGAACATCAAATAAA
AGGCTGACTGCTGATTCAGCGTTTTTCTCATACTGATAATTTTCAATCTT
AATGTTCATCTTTGTTTAGTTCTCTTTGTCTTTTGTCTAAGGATAAAAAA
GNTCTTCCATTTGAACATCAAATAAAAGGCTGACTGCTGATTCAGCGTTT
TTCTCATACTGATAATTTTCAATCTTAATGTTCATCTTTGTTTATTTCAA
GTAGTTCTCTTTGTCTTTTGTCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027572XLOC_027572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043903-exon-sc0004714-1575043694:4990..5708TCONS_00043903-exon-sc0004714-1575043694:4990..5708Clytia hemisphaericaexon
TCONS_00043903-exon-sc0004714-1575043694:1583..2208TCONS_00043903-exon-sc0004714-1575043694:1583..2208Clytia hemisphaericaexon
TCONS_00043903-exon-sc0004714-1510915933:4990..5708TCONS_00043903-exon-sc0004714-1510915933:4990..5708Clytia hemisphaericaexon
TCONS_00043903-exon-sc0004714-1510915933:1583..2208TCONS_00043903-exon-sc0004714-1510915933:1583..2208Clytia hemisphaericaexon
TCONS_00043903-exon-sc0004714-1491911889:4990..5708TCONS_00043903-exon-sc0004714-1491911889:4990..5708Clytia hemisphaericaexon
TCONS_00043903-exon-sc0004714-1491911889:1583..2208TCONS_00043903-exon-sc0004714-1491911889:1583..2208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004714supercontigsc0004714:1583..5708 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13674	0.212676	0	0.265783	0.267559	0.302681	0.687748	0.387649	0.0762506	0.0573887	0.27402	0.17344	0	0.0288039	0	0	0.207035	0	0	0	0.167372	0.348078	1.37955	1.70707	0.0670241	0.450772	0.380139	0.115814	0.793211	0.299784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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