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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043899 ID=TCONS_00043899|Name=TCONS_00043899|organism=Clytia hemisphaerica|type=transcript|length=474bp
cttttctattttgtaagcTTTCGCGCTCTTTACATTTACAACTTCAACAC
CAGGCGCTTCGACTCCTTCCTTGGAAACATGAAGAAGAAGTTTGGGAATG
AACTTGTTTCTTCAAAGACTTTGTGCTTTAGGACATCCTGATGAATCAGT
CTAAAATTCACACTGCAGACACGTTTTCCCACTTATAAATATTTACATAC
GATTGCTGTTATTTGATCCATATCCATATTTTATCATATCCATATTGTTG
CTGATCGACCAGTAATTCTTCATATTATTCATCACCATCAGCTATCACTG
TTATTGGAATTATCAAGCTGCAAGcttGAAAGTCAACTCTGGAAAACTTC
TGAGAAGAATCATTTCCATCCATTGTCATCACTGGTGTTCGAGGCCAGat
ttcAAGACCACCCTTCACTCTGTGTGAGGGGTTATACTCAGCATTATCAG
CTCAATCGGCACTATCAGCTTAAT Run BLAST on NCBI transcript from alignment at sc0004709:796..2940+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043899 ID=TCONS_00043899|Name=TCONS_00043899|organism=Clytia hemisphaerica|type=transcript|length=2145bp|location=Sequence derived from alignment at sc0004709:796..2940+ (Clytia hemisphaerica)
cttttctattttgtaagcTTTCGCGCTCTTTACATTTACAACTTCAACAC
CAGGCGCTTCGACTCCTTCCTTGGAAACATGAAGAAGAAGTTTGGGAATG
AACTTGTTTCTTCAAAGACTTTGTGCTTTAGGACATCCTGATGAATCAGT
CTAAAATTCACACTGCAGACACGTTTTCCCACTTATAAATATTTACATAC
GATTGCTGTTATTTGATCCATATCCATATTTTATCATATCCATATTGTTG
CTGATCGACCAGTAATTCTTCATATTATTCATCACCATCAGCTATCACTG
TTATTGGAATTATCAAGCTGCAAGGTATGTAAATGTGTTATTATACTGTT
GCTAACGAATCGAAAGGTAGCTTTATAGTTtgattaaaattaaattctta
agAAGTCCATCATATTTTGTATCCTTCTGGTGGAAAGCTTTCACTTAAGT
AGAGCACACTGTGCGTTTTACATACAGTATATATGTAGTTTAATCGAGCA
ACCAGTGACGGTCTGAAAAACCACTGTTTTACTTACAGGCGTTCGATCGG
GCAAGTCAAAAATTTGTGTCAGGCAACCATCATGCATCAATAATATGTTC
TGTTCACGTTgcccgattttcaaaacataaatcccAAGTCGGCCCAATCG
CAAtgtcggaaaattttttgaatagccAAGCCCTTTTCTACATCACCATT
CGCTTCAAgttttcacttcacccaccacAACACAGATGATGTTACGCAAG
GAAATCGTCACAAGCCATAATGCGCGTTcagcagattttgaaaatgaaag
tgtaaAGAATAAACATTGCTGAAACGTGTTTAAAACGCGGGTAAAAAGTC
CTTGGCTGGTTTGTGAgcctttgaaatttgtttattttgtattctGATTG
CTCTCTCATGATGCCCCGCCAttatgaagtttttttttgtgtctGCTAAA
TGCGATTTTGGGATACTTTGCATTACCAACTTTTGCTTGCGGCAAACACC
CTTGCCACATTGATTGAGTcccatttgagttttttttcgtCCACCTTCAT
TGAAATTATCAACTTGACATTCACTGACATGATAGAGCCAACTGATTGGA
TTTGGGGATATTTTATGACGCAAACGGAACATATTATTGATATACGCTTA
AGCAACAACCAGCAGCAAGgcagaaaaatttaaacacaGATTCTGTCCTT
GCATCTTTCCAATCTTTGAAAATGGCTGATAGAACTAAACAAGGATTGAC
AACCAGCTTTTTAGCGTtttttgattggtgttcgattgaATTCaatgaat
tgattttttttattttttgttttttttcagcttGAAAGTCAACTCTGGAA
AACTTCTGAGAAGAATCATTTCCATCCATTGTCATCACTGGTGTTCGAGG
CCAGGTTAGTACTTACTGGGATGATTTTAATTGTCTTATAAGAATAGtat
tattttgctataaaaCAATAGCAGCTGAAAAACTTCTTTCCTCCAAGACT
ATTTAAAGTCTTAAATTAACCTTTTTTAAGAGTATAAATTAATGcgaatg
accaaaatatttaaCCATTaagttttgcggaatttaataaTGCGAATTGG
GCCAAATTCGCATTAAATAGCCCCGCATTAATTTATACTCTTAAGGTATT
CAAAACCAAACCAAAAGTCAAATCTTTTGTACAATAAGGGGTGACAGATT
ATTGCAGATGatgattcaaattattttctagAATAATCTAAGTTAATAAT
GGTAGCAGCCCCAGCggacatcaaaaaattttctggttccCAACTTTTGT
CACTCTTATCTCTAAAAGCCGGGTTAGAAAGTTTGTAAAAAGACCCGAGA
AATcgaaattcaataaaaattaaGGTCCGCTCCTTAAGAGCTTCAGCGTG
GGTGGCTGCCAATATGCCattggaatatcagataagtcaTTTTTGCTGAC
CACCCGCCCGTCTGGTACTTATAAGACACGCTGCGACAGGAACAATTGAA
TTTTTCGATGTCCACCCTATCACCTTTATGTCGTACAATTATAtcttcct
aatttttttttttttacagatttcAAGACCACCCTTCACTCTGTGTGAGG
GGTTATACTCAGCATTATCAGCTCAATCGGCACTATCAGCTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043899-exon-sc0004709-1491911889:796..1119 | TCONS_00043899-exon-sc0004709-1491911889:796..1119 | Clytia hemisphaerica | exon |
| TCONS_00043899-exon-sc0004709-1510915933:796..1119 | TCONS_00043899-exon-sc0004709-1510915933:796..1119 | Clytia hemisphaerica | exon |
| TCONS_00043899-exon-sc0004709-1575043694:796..1119 | TCONS_00043899-exon-sc0004709-1575043694:796..1119 | Clytia hemisphaerica | exon |
| TCONS_00043899-exon-sc0004709-1491911889:2126..2199 | TCONS_00043899-exon-sc0004709-1491911889:2126..2199 | Clytia hemisphaerica | exon |
| TCONS_00043899-exon-sc0004709-1510915933:2126..2199 | TCONS_00043899-exon-sc0004709-1510915933:2126..2199 | Clytia hemisphaerica | exon |
| TCONS_00043899-exon-sc0004709-1575043694:2126..2199 | TCONS_00043899-exon-sc0004709-1575043694:2126..2199 | Clytia hemisphaerica | exon |
| TCONS_00043899-exon-sc0004709-1491911889:2865..2940 | TCONS_00043899-exon-sc0004709-1491911889:2865..2940 | Clytia hemisphaerica | exon |
| TCONS_00043899-exon-sc0004709-1510915933:2865..2940 | TCONS_00043899-exon-sc0004709-1510915933:2865..2940 | Clytia hemisphaerica | exon |
| TCONS_00043899-exon-sc0004709-1575043694:2865..2940 | TCONS_00043899-exon-sc0004709-1575043694:2865..2940 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004709 | supercontig | sc0004709:796..2940 + |
Blast
The following BLAST results are available for this feature:
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