TCONS_00043888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043888
Unique NameTCONS_00043888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043888 ID=TCONS_00043888|Name=TCONS_00043888|organism=Clytia hemisphaerica|type=transcript|length=1207bp
GTAAAATTTAGAGGCGAAAATTGTAATTTAGactattttcgatatttttt
ggGCAATGATGAATAATTGATCAATAAAATTATCAACCTTTGtgtgatga
aatatttttttggctgtttgctagtctgaatcgcagacctctagaGATAC
ATACTTCCTGTATATCAAgcagcctctataagaaactcttttccCTAGAG
ATGAGCAGAATCGTTGCTATTTGCTTGTTTTGTAATGAGAATAAAATAAC
TGGTGTGATGCCGAGTACCGCTGGAGGCCTCTTTTAAAAATGaatatttg
aaattcatttcaGCTCAAAATGAAGGAAGCTTTGGGCGAGGAATGTGGTG
CAACTGCCAAAGAAATAGCCGCCTTACCAGAAGAAATTGTCTTGAATACC
AAAATCACAATGCAAGGagttaattttgaatttcacaAGGATTATGATGT
GCCAGCTAGGGCACAAATACGATGTTTTGGTGCTTCAGAATTGTCAGCTA
TTCCGTTTGATATGTTTAATGTTCCTGGCGAAAAACCTATCTTCCAAATT
CAAGAGTTTTCTTATACGCCTTCCTATATGGATATGGAAGAATTAGTGAA
AGGAAAACCGAAAGCAAAACCAGCAGCTAAAGAAAAGCCGAAAGCAGCTA
AAGAAAAGCCGAAAGCAGCTAGATGGAATTCTCTACCAAAATATGACTCT
AGTAAACACAAGATGTTCCTCAGAATTACTTTTGTTCTGACAATTCCTGA
CAAATATAGTACAATACCCCATACATCTATAGGTgaacataaaaaacatt
tttaacacaacatttacatttttattaaTATCGCTTTGGTCATGACTTTT
CATTCCCATTCGAAGttgaatgtaaaaaaattcactcccaAACCCCACTG
GACTTTTTAGCTTATCACAATAGAATTTcgatccccattgggatttcgat
aggaaTCTTTATCCCCACTTTGGGGAAAAAttccaccagggctgtgagac
aggggtgtgaatGAGAATTCGCCTTGTTATATTAAGTTTAAGATATCTGT
TGGAGAACGTCTTAAAATTTACCTTTACTGATATTTCGACTTTTAGCTAA
AATAAGATCTACAAAAGGAGAACAattataaaaatgagaaaatatcaaaa
tatcaaacTAAGGGTCCTGTAGCGCAAGACCATAATACAAGAGACTCTCA
GAAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00043888-protein

>TCONS_00043888-protein ID=TCONS_00043888-protein|Name=TCONS_00043888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MKEALGEECGATAKEIAALPEEIVLNTKITMQGVNFEFHKDYDVPARAQI
RCFGASELSAIPFDMFNVPGEKPIFQIQEFSYTPSYMDMEELVKGKPKAK
PAAKEKPKAAKEKPKAARWNSLPKYDSSKHKMFLRITFVLTIPDKYSTIP
HTSIGEHKKHF
Run BLAST on NCBI

transcript from alignment at sc0004701:4371..5874-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043888 ID=TCONS_00043888|Name=TCONS_00043888|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at sc0004701:4371..5874- (Clytia hemisphaerica)
GTAAAATTTAGAGGCGAAAATTGTAATTTAGACTATTTTCGATATTTTTT
GGGCAATGATGAATAATTGATCAATAAAATTATCAACCTTTGTGTGATGA
AATATTTTTTTGGCTGTTTGCTAGTCTGAATCGCAGACCTCTAGAGATAC
ATACTTCCTGTATATCAAGCAGCCTCTATAAGAAACTCTTTTCCCTAGAG
ATGAGCAGAATCGTTGCTATTTGCTTGTTTTGTAATGAGAATAAAATAAC
TGGTGTGATGCCGAGTACCGCTGGAGGCCTCTTTTAAAAATGAATATTTG
AAATTCATTTCAGCTCAAAATGAAGGAAGCTTTGGGCGAGGAATGTGGTG
CAACTGCCAAAGAAATAGCCGCCTTACCAGAAGAAATTGTCTTGAATACC
AAAATCACAATGCAAGGAGTTAATTTTGAATTTCACAAGGATTATGATGT
GCCAGCTAGGTAGGAAATAACAGTTAAGTAGACTTAGAGTACTTGGTCGC
CATTTTGAAAGAAAAAAATAAATATAAGATTGGCCCTATCTAGTGATAAA
AACATTACAATTCGTTTTTAACTTNTATGATGTGCCAGCTAGGTAGGAAA
TAACAGTTAAGTAGACTTAGAGTACTTGGTCGCCATTTTGAAAGAAAAAA
ATAAATATAAGATTGGCCCTATCTAGTGATAAAAACATTACAATTCGTTT
TTAACTTCCAAAAACAACTAAAACCTGGTAAAAAATGAATTTTTCTTTTC
AATCAGGGCACAAATACGATGTTTTGGTGCTTCAGAATTGTCAGCTATTC
CGTTTGATATGTTTAATGTTCCTGGCGAAAAACCTATCTTCCAAATTCAA
GAGTTTTCTTATACGCCTTCCTATATGGATATGGAAGAATTAGTGAAAGG
AAAACCGAAAGCAAAACCAGCAGCTAAAGAAAAGCCGAAAGCAGCTAAAG
AAAAGCCGAAAGCAGCTAGATGGAATTCTCTACCAAAATATGACTCTAGT
AAACACAAGATGTTCCTCAGAATTACTTTTGTTCTGACAATTCCTGACAA
ATATAGTACAATACCCCATACATCTATAGGTGAACATAAAAAACATTTTT
AACACAACATTTACATTTTTATTAATATCGCTTTGGTCATGACTTTTCAT
TCCCATTCGAAGTTGAATGTAAAAAAATTCACTCCCAAACCCCACTGGAC
TTTTTAGCTTATCACAATAGAATTTCGATCCCCATTGGGATTTCGATAGG
AATCTTTATCCCCACTTTGGGGAAAAATTCCACCAGGGCTGTGAGACAGG
GGTGTGAATGAGAATTCGCCTTGTTATATTAAGTTTAAGATATCTGTTGG
AGAACGTCTTAAAATTTACCTTTACTGATATTTCGACTTTTAGCTAAAAT
AAGATCTACAAAAGGAGAACAATTATAAAAATGAGAAAATATCAAAATAT
CAAACTAAGGGTCCTGTAGCGCAAGACCATAATACAAGAGACTCTCAGAA
AAAC

Coding sequence (CDS) from alignment at sc0004701:4371..5874-

>TCONS_00043888 ID=TCONS_00043888|Name=TCONS_00043888|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0004701:4371..5874- (Clytia hemisphaerica)
GGCACAAATACGATGTTTTGGTGCTTCAGAATTGTCAGCTATTCCGTTTG
ATATGTTTAATGTTCCTGGCGAAAAACCTATCTTCCAAATTCAAGAGTTT
TCTTATACGCCTTCCTATATGGATATGGAAGAATTAGTGAAAGGAAAACC
GAAAGCAAAACCAGCAGCTAAAGAAAAGCCGAAAGCAGCTAAAGAAAAGC
CGAAAGCAGCTAGATGGAATTCTCTACCAAAATATGACTCTAGTAAACAC
AAGATGTTCCTCAGAATTACTTTTGTTCTGACAATTCCTGACAAATATAG
TACAATACCCCATACATCTATAGGTGAACATAAAAAACATTTTTAAATGA
AGGAAGCTTTGGGCGAGGAATGTGGTGCAACTGCCAAAGAAATAGCCGCC
TTACCAGAAGAAATTGTCTTGAATACCAAAATCACAATGCAAGGAGTTAA
TTTTGAATTTCACAAGGATTATGATGTGCCAGCTAGGGCACAAATACGAT
GTTTTGGTGCTTCAGAATTGTCAGCTATTCCGTTTGATATGTTTAATGTT
CCTGGCGAAAAACCTATCTTCCAAATTCAAGAGTTTTCTTATACGCCTTC
CTATATGGATATGGAAGAATTAGTGAAAGGAAAACCGAAAGCAAAACCAG
CAGCTAAAGAAAAGCCGAAAGCAGCTAAAGAAAAGCCGAAAGCAGCTAGA
TGGAATTCTCTACCAAAATATGACTCTAGTAAACACAAGATGTTCCTCAG
AATTACTTTTGTTCTGACAATTCCTGACAAATATAGTACAATACCCCATA
CATCTATAGGTGAACATAAAAAACATTTTTAAATGAAGGAAGCTTTGGGC
GAGGAATGTGGTGCAACTGCCAAAGAAATAGCCGCCTTACCAGAAGAAAT
TGTCTTGAATACCAAAATCACAATGCAAGGAGTTAATTTTGAATTTCACA
AGGATTATGATGTGCCAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027558XLOC_027558Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043888-proteinTCONS_00043888-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043888-exon-sc0004701-1575043694:5416..5874TCONS_00043888-exon-sc0004701-1575043694:5416..5874Clytia hemisphaericaexon
TCONS_00043888-exon-sc0004701-1575043694:4371..5118TCONS_00043888-exon-sc0004701-1575043694:4371..5118Clytia hemisphaericaexon
TCONS_00043888-exon-sc0004701-1510915933:5416..5874TCONS_00043888-exon-sc0004701-1510915933:5416..5874Clytia hemisphaericaexon
TCONS_00043888-exon-sc0004701-1510915933:4371..5118TCONS_00043888-exon-sc0004701-1510915933:4371..5118Clytia hemisphaericaexon
TCONS_00043888-exon-sc0004701-1491911889:5416..5874TCONS_00043888-exon-sc0004701-1491911889:5416..5874Clytia hemisphaericaexon
TCONS_00043888-exon-sc0004701-1491911889:4371..5118TCONS_00043888-exon-sc0004701-1491911889:4371..5118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004701supercontigsc0004701:4371..5874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107442	0.139771	0	0	0.0958792	0.075765	0	0	0.0299563	0	0.144063	0.0236753	0	0	0.0201858	0	7.28027	6.32353	0	0.0840969	5.69859	6.19702	2.90028	2.51842	5.13971	6.04756	1.01914	0.319294	0.0394564	0.101476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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