TCONS_00043886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043886
Unique NameTCONS_00043886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043886 ID=TCONS_00043886|Name=TCONS_00043886|organism=Clytia hemisphaerica|type=transcript|length=682bp
TTTCTTCAggaatttcattaaaatgaactTGATACACATGGTTCAAAATA
GAATTTACACACTCTTGAGCATCAAATTGTTCTCGTTGTGTATAATCGTA
GCCTGGAAGTTCTATAGACTTTATGAATTCGTACGTTTCTATGGGTGATT
CAGAGCTTTCAATTGTAGAAAATAAGTCTTTGACTGCTAAAATACTGGAG
TCATTGGTATCAAGAGTTTTAACAAATTCACGGAAGGTATCAATAGTGTA
TAATGATTGAATAACTGAATTGAAGAAACAGACATTTTGACCTAGATTTT
TCAATCCTAATGGTTTGTTTTCTCTGATGAAATTTACAGTATTATTATGT
ATGTTGTTTGGGGTTCCTCGaaaacacgttttcttttttggtCTTCCTCT
TGGAGATTTAATTGCATTGTTAATTGGCCCTGGATTTAATTCTACATCTC
CATCTACAATAAGCCGAGTGATTAGCAAAAAACTTGTATCGTAAGCAAGG
GGTTCGTTATTTGTATATTTGTATTGCAAGTATTGTAAGTTCGAGTGGCG
TTTATAATGGTCGTGCCTTTCTTGACCTTCGTAATGGCGATTATAGTCAA
ACCAAGGAAGTAAAAGAGAGTATCCCTTACTACCTTGGCGGTGCCTTCGT
TGACTTTGGCTGATATCAGCTCTTTTGGTGGg
Run BLAST on NCBI

protein sequence of TCONS_00043886-protein

>TCONS_00043886-protein ID=TCONS_00043886-protein|Name=TCONS_00043886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
PTKRADISQSQRRHRQGSKGYSLLLPWFDYNRHYEGQERHDHYKRHSNLQ
YLQYKYTNNEPLAYDTSFLLITRLIVDGDVELNPGPINNAIKSPRGRPKK
KTCFRGTPNNIHNNTVNFIRENKPLGLKNLGQNVCFFNSVIQSLYTIDTF
REFVKTLDTNDSSILAVKDLFSTIESSESPIETYEFIKSIELPGYDYTQR
EQFDAQECVNSILNHVYQVHFNEIPEE
Run BLAST on NCBI

transcript from alignment at sc0004700:2451..3132

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043886 ID=TCONS_00043886|Name=TCONS_00043886|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at sc0004700:2451..3132 (Clytia hemisphaerica)
cCCACCAAAAGAGCTGATATCAGCCAAAGTCAACGAAGGCACCGCCAAGG
TAGTAAGGGATACTCTCTTTTACTTCCTTGGTTTGACTATAATCGCCATT
ACGAAGGTCAAGAAAGGCACGACCATTATAAACGCCACTCGAACTTACAA
TACTTGCAATACAAATATACAAATAACGAACCCCTTGCTTACGATACAAG
TTTTTTGCTAATCACTCGGCTTATTGTAGATGGAGATGTAGAATTAAATC
CAGGGCCAATTAACAATGCAATTAAATCTCCAAGAGGAAGaccaaaaaag
aaaacgtgttttCGAGGAACCCCAAACAACATACATAATAATACTGTAAA
TTTCATCAGAGAAAACAAACCATTAGGATTGAAAAATCTAGGTCAAAATG
TCTGTTTCTTCAATTCAGTTATTCAATCATTATACACTATTGATACCTTC
CGTGAATTTGTTAAAACTCTTGATACCAATGACTCCAGTATTTTAGCAGT
CAAAGACTTATTTTCTACAATTGAAAGCTCTGAATCACCCATAGAAACGT
ACGAATTCATAAAGTCTATAGAACTTCCAGGCTACGATTATACACAACGA
GAACAATTTGATGCTCAAGAGTGTGTAAATTCTATTTTGAACCATGTGTA
TCAagttcattttaatgaaattccTGAAGAAA

Coding sequence (CDS) from alignment at sc0004700:2451..3132

>TCONS_00043886 ID=TCONS_00043886|Name=TCONS_00043886|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at sc0004700:2451..3132 (Clytia hemisphaerica)
cCCACCAAAAGAGCTGATATCAGCCAAAGTCAACGAAGGCACCGCCAAGG
TAGTAAGGGATACTCTCTTTTACTTCCTTGGTTTGACTATAATCGCCATT
ACGAAGGTCAAGAAAGGCACGACCATTATAAACGCCACTCGAACTTACAA
TACTTGCAATACAAATATACAAATAACGAACCCCTTGCTTACGATACAAG
TTTTTTGCTAATCACTCGGCTTATTGTAGATGGAGATGTAGAATTAAATC
CAGGGCCAATTAACAATGCAATTAAATCTCCAAGAGGAAGaccaaaaaag
aaaacgtgttttCGAGGAACCCCAAACAACATACATAATAATACTGTAAA
TTTCATCAGAGAAAACAAACCATTAGGATTGAAAAATCTAGGTCAAAATG
TCTGTTTCTTCAATTCAGTTATTCAATCATTATACACTATTGATACCTTC
CGTGAATTTGTTAAAACTCTTGATACCAATGACTCCAGTATTTTAGCAGT
CAAAGACTTATTTTCTACAATTGAAAGCTCTGAATCACCCATAGAAACGT
ACGAATTCATAAAGTCTATAGAACTTCCAGGCTACGATTATACACAACGA
GAACAATTTGATGCTCAAGAGTGTGTAAATTCTATTTTGAACCATGTGTA
TCAagttcattttaatgaaattccTGAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027556XLOC_027556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043886-exon-sc0004700-1491911889:2451..3132TCONS_00043886-exon-sc0004700-1491911889:2451..3132Clytia hemisphaericaexon
TCONS_00043886-exon-sc0004700-1510915933:2451..3132TCONS_00043886-exon-sc0004700-1510915933:2451..3132Clytia hemisphaericaexon
TCONS_00043886-exon-sc0004700-1575043694:2451..3132TCONS_00043886-exon-sc0004700-1575043694:2451..3132Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043886-proteinTCONS_00043886-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004700supercontigsc0004700:2451..3132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137855	0.000272771	0.227924	0	1.27529	0.700172	4.54093	5.37779	0	2.47446	3.52108	1.02081	0.604671	1.20911	0.314187	0.546089	0.405291	1.0097	0.5638	1.09908	0.260126	0.163709	1.4294	2.02158	4.07751	7.29887	5.391	4.30174	0.827227	0.585896
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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