|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043883 ID=TCONS_00043883|Name=TCONS_00043883|organism=Clytia hemisphaerica|type=transcript|length=1058bp
agttcgacatacaaaataaaaaaagtttaacacaaaataaaaaaagttca
acgcAAAATAAAAGAAACCAACCGCAACATGGCGATACTACACTACAGAA
TTGATACCCTGATGACACTAAACTATGACAGCATCTACAATCTTAGCCAA
AATATatgtcaaaaaaattcaaaatatctgcTTTCACCTCTTTCCCCGAC
ATCAATGTTTGTCAAGGAGCTAGTTTGTGCAGCGAGTTAGGTTTGTTGCA
TTGATACTTTCAATAGAGGTCTTGCGCATTTCGCCAAgatacgtaatttc
cgccattatggagtcaAACGTTCGATTTCGTAGAGGCGATCCcttatgca
aatcgaacgtttgactccataatggcggaaattacgtaacttagcgaaat
gtgcaagacctAGCACTATTACTCGATTGGGATGCGAGACTATTTCTATC
AAATGTATTANCTGGATCTTCGCTGAACCACCCCTTCAGGATCCAGTTCT
TGTAAAAGGTTCATTACTTTATCACGAGGACATCTGATGTTATACTTTGT
CCTTAAAAGGTTCCACATATTCCTATATCCAAGATTAGAGGCAGGTCCTT
GGAGTTCCGTTTGCATGATTCCACTCAATGTTGCATCGTCTACATTCTGG
CTCTTATCAAGCCCATACAGTACGAGTCTTCTTTTAAGTGTCCTGACACC
AAGATTGACACCGTAATTTTCAAGTAAACAGACAATGGCCGAATATGTGT
GACCATCgtgaaaatacttttttatcagAGATTCCTCAATATTTTCCCCT
TCATTTGGGTTTGGAACAATAAATTGATCTCCACAATTTCCACAGAATCT
ATATTCAACTTCCCTTTGCGCACCACACGATGGACAAAACATACTATGCC
TTTAAACCGTTAAATAATTCGGGTGAAGGCACTTGCTTCTTATGGTTTAG
TGTCAGGGTATCAATTCTGTAGTATCGCCATGTTGCGGTTGGTTTCTTTT
ATTTTgcgttgaactttttttattttgtgttaaactttttttattttgta
tgtcgaac Run BLAST on NCBI protein sequence of TCONS_00043883-protein >TCONS_00043883-protein ID=TCONS_00043883-protein|Name=TCONS_00043883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MFCPSCGAQREVEYRFCGNCGDQFIVPNPNEGENIEESLIKKYFHDGHTY
SAIVCLLENYGVNLGVRTLKRRLVLYGLDKSQNVDDATLSGIMQTELQGP
ASNLGYRNMWNLLRTKYNIRCPRDKVMNLLQELDPEGVVQRRSX Run BLAST on NCBI transcript from alignment at sc0004697:296..1353 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043883 ID=TCONS_00043883|Name=TCONS_00043883|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at sc0004697:296..1353 (Clytia hemisphaerica)
gttcgacatacaaaataaaaaaagtttaacacaaaataaaaaaagttcaa
cgcAAAATAAAAGAAACCAACCGCAACATGGCGATACTACAGAATTGATA
CCCTGACACTAAACCATAAGAAGCAAGTGCCTTCACCCGAATTATTTAAC
GGTTTAAAGGCATAGTATGTTTTGTCCATCGTGTGGTGCGCAAAGGGAAG
TTGAATATAGATTCTGTGGAAATTGTGGAGATCAATTTATTGTTCCAAAC
CCAAATGAAGGGGAAAATATTGAGGAATCTctgataaaaaagtattttca
cGATGGTCACACATATTCGGCCATTGTCTGTTTACTTGAAAATTACGGTG
TCAATCTTGGTGTCAGGACACTTAAAAGAAGACTCGTACTGTATGGGCTT
GATAAGAGCCAGAATGTAGACGATGCAACATTGAGTGGAATCATGCAAAC
GGAACTCCAAGGACCTGCCTCTAATCTTGGATATAGGAATATGTGGAACC
TTTTAAGGACAAAGTATAACATCAGATGTCCTCGTGATAAAGTAATGAAC
CTTTTACAAGAACTGGATCCTGAAGGGGTGGTTCAGCGAAGATCCAGNTA
ATACATTTGATAGAAATAGTCTCGCATCCCAATCGAGTAATAGTGCTagg
tcttgcacatttcgctaagttacgtaatttccgccattatggagtcaaac
gttcgatttgcataagGGATCGCCTCTACGAAATCGAACGTTtgactcca
taatggcggaaattacgtatcTTGGCGAAATGCGCAAGACCTCTATTGAA
AGTATCAATGCAACAAACCTAACTCGCTGCACAAACTAGCTCCTTGACAA
ACATTGATGTCGGGGAAAGAGGTGAAAgcagatattttgaatttttttga
catATATTTTGGCTAAGATTGTAGATGCTGTCATAGTTTAGTGTCATCAG
GGTATCAATTCTGTAGTGTAGTATCGCCATGTTGCGGTTGGTTTCTTTTA
TTTTgcgttgaactttttttattttgtgttaaactttttttattttgtat
gtcgaact Coding sequence (CDS) from alignment at sc0004697:296..1353 >TCONS_00043883 ID=TCONS_00043883|Name=TCONS_00043883|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0004697:296..1353 (Clytia hemisphaerica)
ATGTTTTGTCCATCGTGTGGTGCGCAAAGGGAAGTTGAATATAGATTCTG
TGGAAATTGTGGAGATCAATTTATTGTTCCAAACCCAAATGAAGGGGAAA
ATATTGAGGAATCTctgataaaaaagtattttcacGATGGTCACACATAT
TCGGCCATTGTCTGTTTACTTGAAAATTACGGTGTCAATCTTGGTGTCAG
GACACTTAAAAGAAGACTCGTACTGTATGGGCTTGATAAGAGCCAGAATG
TAGACGATGCAACATTGAGTGGAATCATGCAAACGGAACTCCAAGGACCT
GCCTCTAATCTTGGATATAGGAATATGTGGAACCTTTTAAGGACAAAGTA
TAACATCAGATGTCCTCGTGATAAAGTAATGAACCTTTTACAAGAACTGG
ATCCTGAAGGGGTGGTTCAGCGAAGATCCAGNTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043883-exon-sc0004697-1491911889:296..1353 | TCONS_00043883-exon-sc0004697-1491911889:296..1353 | Clytia hemisphaerica | exon |
| TCONS_00043883-exon-sc0004697-1510915933:296..1353 | TCONS_00043883-exon-sc0004697-1510915933:296..1353 | Clytia hemisphaerica | exon |
| TCONS_00043883-exon-sc0004697-1575043694:296..1353 | TCONS_00043883-exon-sc0004697-1575043694:296..1353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004697 | supercontig | sc0004697:296..1353 . |
Blast
The following BLAST results are available for this feature:
|
