TCONS_00043879 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00043879
Unique Name	TCONS_00043879
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	846

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0004694:1..1747+
coding sequence from alignment at sc0004694:1..1747+

transcript sequence

>TCONS_00043879 ID=TCONS_00043879|Name=TCONS_00043879|organism=Clytia hemisphaerica|type=transcript|length=846bp
ctgactgactgactgactgactgactgactgactgactgactgactgact
gactgactgactgactgactgactgactgactgactgatgtTATAATGTT
TCAATCCCATGTATAGTATGTTTTAATTTGGATTCCTCTATGTTTTAGAA
GCAAGCGAAAAACCAAGTGATGGTCCTTCAAATAAAAGACCATTTGACTG
CCCCACAAGTGAAAGCCAAAGTGGTGGTCCAGAGGTGTCCTACCAACCTA
TGCTaccgaaaagaaagaagagactaaTGAAAACCCCGTATGGTGCAAGA
TCTAAGAAATGTAATAACTGCGATGAAATGGCTCCAGTCGCAAAAGTGAA
ATGCCCCAAATGCCAGACAACCTTTGAAAGGAAAGGCAAAAGAATCGAGG
ATTACATCCCACCCGGGTCTGTAAATCTCACCCGTGCACGGTACGAAGCA
AAAGGGAAGTTAATTGGAATCGCTTCAAAGGAGCACCAACACCATGTGGT
CCTACTTGATATTGGTCCGACAACAGCTGATGGTTGGGGAAACTCGCCGT
TGGCATTGGAGTTTCTGAATTCAAAACAAGGGCGTCTCTTCTTGCCGACC
TttaaaaaatggttaaaagacAAGCAAAGAACTTTAAATACAACACCAGC
AGATGCACCAGCAGAGGCAGAGGCAACAGCAACCAACCAGCCGATGTACA
AAGCCAGTGGTAAGtgatttacaatttttattaACTTGgttcttttttgg
acctacctggaggtcctataaattaacctgtgttcgtccgtccgtccgtc
cgtctgttaccaacttttctcgggattgaatcataggaatcttttg

Run BLAST on NCBI

protein sequence of TCONS_00043879-protein

>TCONS_00043879-protein ID=TCONS_00043879-protein|Name=TCONS_00043879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MLPKRKKRLMKTPYGARSKKCNNCDEMAPVAKVKCPKCQTTFERKGKRIE
DYIPPGSVNLTRARYEAKGKLIGIASKEHQHHVVLLDIGPTTADGWGNSP
LALEFLNSKQGRLFLPTFKKWLKDKQRTLNTTPADAPAEAEATATNQPMY
KASGK

Run BLAST on NCBI

transcript from alignment at sc0004694:1..1747+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00043879 ID=TCONS_00043879|Name=TCONS_00043879|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at sc0004694:1..1747+ (Clytia hemisphaerica)
ctgactgactgactgactgactgactgactgactgactgactgactgact
gactgactgactgactgactgactgactgactgactgatgtTATAATGTT
TCAATCCCATGTATAGTATGTTTTAATTTGGATTCCTCTATGTTTTAGAA
GCAAGCGAAAAACCAAGTGATGGTCCTTCAAATAAAAGACCATTTGACTG
CCCCACAAGTGAAAGCCAAAGTGGTGGTCCAGAGGTGTCCTACCAACCTA
GTAAGAGCTTGTGTCGTGAATTTTGTACCTATTACAGTGTGCATAAGAGT
CTCTTACTCTACCTTTAAAAACTCTACCCTCCTTTTTATCGCCCTCCCCT
CCTAGGATACAGTTCATGATAATTCTTTTAGAAATTGAATCGTTTAAACT
CTTCAACTGGGTTGATTATACCTATTATCAAATCTTTGTAAATAAGTTCA
TCATTCCATTATTTTCTAGATTGTTCAGATATCTATATTTAAATTATTTA
AATTCTATTTAGTGCTaccgaaaagaaagaagagactaaTGAAAACCCCG
TATGGTGCAAGATCTAAGGTAACTTTTAACGAATCTTTAGAGAGTGGTCA
GAAGGGGTGGAGGATTTTTGAGGGGAAAGGGAAgggttgaaattttttca
agagGAAAGGGggtgtgaaaatattaaacaaaaTTATAGTTGGGGTGTGG
AAATGGTTTTTGTATATGTAATTTTCTTAAATTATCATAGAAATGTAATA
ACTGCGATGAAATGGCTCCAGTCGCAAAAGTGAAATGCCCCAAATGCCAG
ACAACCTTTGAAAGGAAAGGCAAAAGAATCGAGGATTACATCCCACCCGG
GTCTGTAAATCTCACCCGTGCACGGTACGAAGCAAAAGGGAAGGTTCGTT
GTTTTTcagatttcttttcttttttttttttttttttttttgctggcaAA
GACTACCCCTTTATTTGGTGTTGTTTGACTTAAAGATTGAAAATCCTGTA
GGTTGTGCTCGGGACGAATGGAAGGTGAACTTATATTTCACTGGCTTTTA
AAAAACTCGAGGAAGAacatttgatttcaaaaagaCCGCGATGGAAGAAA
TTGTAAAAACGCCAAATCTCTGAAGAAATGCGAACTTTCCGAATTCTTTA
GGACAATTTTAGAGATCTTCaaattaacattttattttgtaaacTTCGTT
TTTACTTCAGTTAATTGGAATCGCTTCAAAGGAGCACCAACACCATGTGG
TCCTACTTGATATTGGTCCGACAACAGCTGATGGTTGGGGAAACTCGCCG
TTGGCATTGGAGTTTCTGAATTCAAAACAAGGGCGTCTCTTCTTGCCGAC
CTttaaaaaatggttaaaaggTATTTGAAATTGATTAAAAGGTTGTTTTC
TGAAGTATGAAGAAGTAGTGTTTaatccaaaattttcttttttcactcTG
TTATTGTACCACAAGATCGCGATAATTCGCTTTCTGGAAGCAGCAGTTAG
AAagtatttcttctttttagacAAGCAAAGAACTTTAAATACAACACCAG
CAGATGCACCAGCAGAGGCAGAGGCAACAGCAACCAACCAGCCGATGTAC
AAAGCCAGTGGTAAGtgatttacaatttttattaACTTGgttcttttttg
gacctacctggaggtcctataaattaacctgtgttcgtccgtccgtccgt
ccgtctgttaccaacttttctcgggattgaatcataggaatcttttg

Coding sequence (CDS) from alignment at sc0004694:1..1747+

>TCONS_00043879 ID=TCONS_00043879|Name=TCONS_00043879|organism=Clytia hemisphaerica|type=CDS|length=2340bp|location=Sequence derived from alignment at sc0004694:1..1747+ (Clytia hemisphaerica)
ATGCTaccgaaaagaaagaagagactaaTGAAAACCCCGTATGGTGCAAG
ATCTAAGAAATGTAATAACTGCGATGAAATGGCTCCAGTCGCAAAAGTGA
AATGCCCCAAATGCCAGACAACCTTTGAAAGGAAAGGCAAAAGAATCGAG
GATTACATCCCACCCGGGTCTGTAAATCTCACCCGTGCACGGTACGAAGC
AAAAGGGAAGTTAATTGGAATCGCTTCAAAGGAGCACCAACACCATGTGG
TCCTACTTGATATTGGTCCGACAACAGCTGATGGTTGGGGAAACTCGCCG
TTGGCATTGGAGTTTCTGAATTCAAAACAAGGGCGTCTCTTCTTGCCGAC
CTttaaaaaatggttaaaagacAAGCAAAGAACTTTAAATACAACACCAG
CAGATGCACCAGCAGAGGCAGAGGCAACAGCAACCAACCAGCCGATGTAC
AAAGCCAGTGGTAAGtgaATGCTaccgaaaagaaagaagagactaaTGAA
AACCCCGTATGGTGCAAGATCTAAGAAATGTAATAACTGCGATGAAATGG
CTCCAGTCGCAAAAGTGAAATGCCCCAAATGCCAGACAACCTTTGAAAGG
AAAGGCAAAAGAATCGAGGATTACATCCCACCCGGGTCTGTAAATCTCAC
CCGTGCACGGTACGAAGCAAAAGGGAAGTTAATTGGAATCGCTTCAAAGG
AGCACCAACACCATGTGGTCCTACTTGATATTGGTCCGACAACAGCTGAT
GGTTGGGGAAACTCGCCGTTGGCATTGGAGTTTCTGAATTCAAAACAAGG
GCGTCTCTTCTTGCCGACCTttaaaaaatggttaaaagacAAGCAAAGAA
CTTTAAATACAACACCAGCAGATGCACCAGCAGAGGCAGAGGCAACAGCA
ACCAACCAGCCGATGTACAAAGCCAGTGGTAAGtgaATGCTaccgaaaag
aaagaagagactaaTGAAAACCCCGTATGGTGCAAGATCTAAGAAATGTA
ATAACTGCGATGAAATGGCTCCAGTCGCAAAAGTGAAATGCCCCAAATGC
CAGACAACCTTTGAAAGGAAAGGCAAAAGAATCGAGGATTACATCCCACC
CGGGTCTGTAAATCTCACCCGTGCACGGTACGAAGCAAAAGGGAAGTTAA
TTGGAATCGCTTCAAAGGAGCACCAACACCATGTGGTCCTACTTGATATT
GGTCCGACAACAGCTGATGGTTGGGGAAACTCGCCGTTGGCATTGGAGTT
TCTGAATTCAAAACAAGGGCGTCTCTTCTTGCCGACCTttaaaaaatggt
taaaagacAAGCAAAGAACTTTAAATACAACACCAGCAGATGCACCAGCA
GAGGCAGAGGCAACAGCAACCAACCAGCCGATGTACAAAGCCAGTGGTAA
GtgaATGCTaccgaaaagaaagaagagactaaTGAAAACCCCGTATGGTG
CAAGATCTAAGAAATGTAATAACTGCGATGAAATGGCTCCAGTCGCAAAA
GTGAAATGCCCCAAATGCCAGACAACCTTTGAAAGGAAAGGCAAAAGAAT
CGAGGATTACATCCCACCCGGGTCTGTAAATCTCACCCGTGCACGGTACG
AAGCAAAAGGGAAGTTAATTGGAATCGCTTCAAAGGAGCACCAACACCAT
GTGGTCCTACTTGATATTGGTCCGACAACAGCTGATGGTTGGGGAAACTC
GCCGTTGGCATTGGAGTTTCTGAATTCAAAACAAGGGCGTCTCTTCTTGC
CGACCTttaaaaaatggttaaaagacAAGCAAAGAACTTTAAATACAACA
CCAGCAGATGCACCAGCAGAGGCAGAGGCAACAGCAACCAACCAGCCGAT
GTACAAAGCCAGTGGTAAGtgaATGCTaccgaaaagaaagaagagactaa
TGAAAACCCCGTATGGTGCAAGATCTAAGAAATGTAATAACTGCGATGAA
ATGGCTCCAGTCGCAAAAGTGAAATGCCCCAAATGCCAGACAACCTTTGA
AAGGAAAGGCAAAAGAATCGAGGATTACATCCCACCCGGGTCTGTAAATC
TCACCCGTGCACGGTACGAAGCAAAAGGGAAGTTAATTGGAATCGCTTCA
AAGGAGCACCAACACCATGTGGTCCTACTTGATATTGGTCCGACAACAGC
TGATGGTTGGGGAAACTCGCCGTTGGCATTGGAGTTTCTGAATTCAAAAC
AAGGGCGTCTCTTCTTGCCGACCTttaaaaaatggttaaaagacAAGCAA
AGAACTTTAAATACAACACCAGCAGATGCACCAGCAGAGGCAGAGGCAAC
AGCAACCAACCAGCCGATGTACAAAGCCAGTGGTAAGtga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_027549	XLOC_027549	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00043879-protein	TCONS_00043879-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0004694	supercontig	sc0004694:1..1747 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.28374	3.10713	4.82473	3.93536	21.7963	19.0338	20.2208	31.0844	17.4548	16.2512	15.3723	15.5805	10.2814	12.9374	6.49294	9.68842	11.6727	10.0597	8.59703	8.75213	13.0373	13.0513	5.48785	6.86573	2.36697	6.13857	11.8262	6.79621	7.23418	6.71291

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00043879 vs. Swiss-Prot (Human)

BLAST of TCONS_00043879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00043879 (transcript) - C. hemisphaerica