TCONS_00043877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043877
Unique NameTCONS_00043877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length693

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043877 ID=TCONS_00043877|Name=TCONS_00043877|organism=Clytia hemisphaerica|type=transcript|length=693bp
TCTTTCACTATATTTCCATATTAGAAAAATATCAATACACACTGCTCCAG
AGTAAATAAAACGCAAAAATAATTATCTGAATGGAGTAAAATGACTAGTT
TGATATTTGTAGCATGGGAGAACTTGTGAAAAATAAAGCAATTTTCTCAG
CATTTTTAGCTAAACGAGATTAGtagaaatgtaaaaattttctgTCGGTT
GCGGCTCCTTTGATATTGTCCCAATTGGTTTCAATTTGATTATCTTGCAT
AAACTAGCGACTAGCCTGTTTTAGCATTTAGGCTTTGTTGTGAGAAAAAA
TGCTTAACAAGCTTCGCCTAAAGATCCATTGGCTTGGAATGGCTAACAGC
AAACAGCACACTCTCCAAATTCCCAACTAACGTATAAGTTATTTATTACA
CCATTGCTGTGAATGAAACACCCTACGGTACTTTTGGTCAGGTGCACAGA
TAAATGTTTGCAACTTAGACATATTTTTCTCAAGTGTGCGACCCGAATTA
GTCAAAATAAATCTCGAGTGGTACGGCCTTGCCATACTCTGCACAAAACA
AAAGGATCCTTGTAGGGGCACCGCACCGGTAGGGTTGGGAAGCTTTCTTA
AATAAATAAGGTCTGTAAAactataccgtcaactgctctaacttggggtg
attggtcgaaacatgggactgttgatattctggcctgtatttt
Run BLAST on NCBI

transcript from alignment at sc0004692:5111..5803

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043877 ID=TCONS_00043877|Name=TCONS_00043877|organism=Clytia hemisphaerica|type=transcript|length=693bp|location=Sequence derived from alignment at sc0004692:5111..5803 (Clytia hemisphaerica)
aaaatacaggccagaatatcaacagtcccatgtttcgaccaatcacccca
agttagagcagttgacggtatagtTTTACAGACCTTATTTATTTAAGAAA
GCTTCCCAACCCTACCGGTGCGGTGCCCCTACAAGGATCCTTTTGTTTTG
TGCAGAGTATGGCAAGGCCGTACCACTCGAGATTTATTTTGACTAATTCG
GGTCGCACACTTGAGAAAAATATGTCTAAGTTGCAAACATTTATCTGTGC
ACCTGACCAAAAGTACCGTAGGGTGTTTCATTCACAGCAATGGTGTAATA
AATAACTTATACGTTAGTTGGGAATTTGGAGAGTGTGCTGTTTGCTGTTA
GCCATTCCAAGCCAATGGATCTTTAGGCGAAGCTTGTTAAGCATTTTTTC
TCACAACAAAGCCTAAATGCTAAAACAGGCTAGTCGCTAGTTTATGCAAG
ATAATCAAATTGAAACCAATTGGGACAATATCAAAGGAGCCGCAACCGAc
agaaaatttttacatttctaCTAATCTCGTTTAGCTAAAAATGCTGAGAA
AATTGCTTTATTTTTCACAAGTTCTCCCATGCTACAAATATCAAACTAGT
CATTTTACTCCATTCAGATAATTATTTTTGCGTTTTATTTACTCTGGAGC
AGTGTGTATTGATATTTTTCTAATATGGAAATATAGTGAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027547XLOC_027547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043877-exon-sc0004692-1491911889:5111..5803TCONS_00043877-exon-sc0004692-1491911889:5111..5803Clytia hemisphaericaexon
TCONS_00043877-exon-sc0004692-1510915933:5111..5803TCONS_00043877-exon-sc0004692-1510915933:5111..5803Clytia hemisphaericaexon
TCONS_00043877-exon-sc0004692-1575043694:5111..5803TCONS_00043877-exon-sc0004692-1575043694:5111..5803Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004692supercontigsc0004692:5111..5803 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.219903	0.643321	0.497972	0.974375	0.691955	0.703018	0.753921	0.794038	0.741233	0.765114	0.668375	0.341727	0.926255	0.253138	0.457851	0.625347	0.440215	0.451206	0.545445	0.733846	0.637845	1.03706	0.336182	0.152819	1.0231	0.491666	0.201021	0.321802	0.244076	0.331566
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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