TCONS_00043875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043875
Unique NameTCONS_00043875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043875 ID=TCONS_00043875|Name=TCONS_00043875|organism=Clytia hemisphaerica|type=transcript|length=417bp
CAagaagtagttgagctccagctcctggactatTCGAACAAGAGcaaaag
atattttatcaagccagaaattgccaagtaaaaaatcaaaacaaacacat
tGGAATAAAAGGTTTTTCAATTGCAAAGAGCATCACAAACTGCCACATGA
GTGGACAGATGAATGTAAAGATTGTAATACCTGTGTTAAGTTTGAGATGT
TGGAAAGATAACCTTTGGATGTTCTACCAAATGCCAAGAAAGCGTTGGAA
TATCTATTCACCACTAAGATCGTCAATACaggaaagaatgagaattttga
aaaaactgttgCAAAGGGTTGTATTGCAATGGattttttgcaatgtttat
ccaaAGAACTATTGAACATTGGAGCACGATATTAAAGTATTATCAAATAA
TTATTAATTATTGAAAA
Run BLAST on NCBI

transcript from alignment at sc0004689:613..1029

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043875 ID=TCONS_00043875|Name=TCONS_00043875|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at sc0004689:613..1029 (Clytia hemisphaerica)
TTTTCAATAATTAATAATTATTTGATAATACTTTAATATCGTGCTCCAAT
GTTCAATAGTTCTttggataaacattgcaaaaaatCCATTGCAATACAAC
CCTTTGcaacagttttttcaaaattctcattctttcctGTATTGACGATC
TTAGTGGTGAATAGATATTCCAACGCTTTCTTGGCATTTGGTAGAACATC
CAAAGGTTATCTTTCCAACATCTCAAACTTAACACAGGTATTACAATCTT
TACATTCATCTGTCCACTCATGTGGCAGTTTGTGATGCTCTTTGCAATTG
AAAAACCTTTTATTCCaatgtgtttgttttgattttttacttggcaattt
ctggcttgataaaatatcttttgCTCTTGTTCGAatagtccaggagctgg
agctcaactacttctTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027545XLOC_027545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043875-exon-sc0004689-1491911889:613..1029TCONS_00043875-exon-sc0004689-1491911889:613..1029Clytia hemisphaericaexon
TCONS_00043875-exon-sc0004689-1510915933:613..1029TCONS_00043875-exon-sc0004689-1510915933:613..1029Clytia hemisphaericaexon
TCONS_00043875-exon-sc0004689-1575043694:613..1029TCONS_00043875-exon-sc0004689-1575043694:613..1029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004689supercontigsc0004689:613..1029 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14742	2.08545	0.481925	1.45411	20.9125	21.2922	36.5548	32.3705	14.2239	19.3298	21.6123	8.30139	27.1495	13.3188	9.32029	18.2415	10.659	10.111	20.8905	24.1181	10.6464	13.6793	7.04296	9.44744	15.9492	27.8206	31.564	24.9579	19.5802	16.8714
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top