TCONS_00043872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043872
Unique NameTCONS_00043872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043872 ID=TCONS_00043872|Name=TCONS_00043872|organism=Clytia hemisphaerica|type=transcript|length=854bp
ATACGCaacattatatacattttaataCATATTTCATTACGTCATCGTCC
CTTGAGACTCTTTTCGCCCATAGTCACATTTTCTGTTTTGTCACTCTCAC
TTCAGTTAGACGAGAGCTTTTAGAGAGATAAGACGTATGGTGTTGAGACA
TGTTTTTgagtttgacattttgacatcattttactttgaatttcaattca
caTTCGAAGTACATTTCATGGCAGTTTTCACAGAGTGACTACACTTGGGC
AATCTGGTAAGCATATTCTAGTTATTTAACATTtataaattcagaaaatt
tacaaaaatatttattcaaaacttagattttcatttattttattcatttc
attggactttcATTGCACTCACGCACGTTCGTGCTCAGGCTCTCTGGCTC
GTTTAgtccttttccttttcattggccttgccttgttttcattttggctC
AGTTCAGTTCATTTTCCGGCCTTCATTTTCCAATTGCATTGCACGTTCGT
GCCCTGGTTTCATGGTCTTCTCAGCTGTGCACTCGTTTCGCCCGCATTCT
CATTCGCACGTTCGTGCTCAGGCTTCTTGGCGGTCACAGCTGTGGTTCTA
CCTTGTTCACGTTTCGTGccttttttgtttgattattagtcatttttttc
attaattagaCATTTTTTTCACTAATTAGTCAATTTTCACTAATTAGCCA
TTTTCACTAATTAGCATCATCATTcctagttttcatttatttagtcaaat
tgtcaatttttctaaattattttcNctagttttcatttatttagtcaaat
tgtcaatttttctaaattattttctttgtattcatttcagtttgaacact
tCAC
Run BLAST on NCBI

transcript from alignment at sc0004686:4244..5097

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043872 ID=TCONS_00043872|Name=TCONS_00043872|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0004686:4244..5097 (Clytia hemisphaerica)
GTGaagtgttcaaactgaaatgaatacaaagaaaataatttagaaaaatt
gacaatttgactaaataaatgaaaactagNgaaaataatttagaaaaatt
gacaatttgactaaataaatgaaaactaggAATGATGATGCTAATTAGTG
AAAATGGCTAATTAGTGAAAATTGACTAATTAGTGAAAAAAATGtctaat
taatgaaaaaaatgactaataatcaaacaaaaaaggCACGAAACGTGAAC
AAGGTAGAACCACAGCTGTGACCGCCAAGAAGCCTGAGCACGAACGTGCG
AATGAGAATGCGGGCGAAACGAGTGCACAGCTGAGAAGACCATGAAACCA
GGGCACGAACGTGCAATGCAATTGGAAAATGAAGGCCGGAAAATGAACTG
AACTGagccaaaatgaaaacaaggcaaggccaatgaaaaggaaaaggacT
AAACGAGCCAGAGAGCCTGAGCACGAACGTGCGTGAGTGCAATgaaagtc
caatgaaatgaataaaataaatgaaaatctaagttttgaataaatatttt
tgtaaattttctgaatttataAATGTTAAATAACTAGAATATGCTTACCA
GATTGCCCAAGTGTAGTCACTCTGTGAAAACTGCCATGAAATGTACTTCG
AAtgtgaattgaaattcaaagtaaaatgatgtcaaaatgtcaaactcAAA
AACATGTCTCAACACCATACGTCTTATCTCTCTAAAAGCTCTCGTCTAAC
TGAAGTGAGAGTGACAAAACAGAAAATGTGACTATGGGCGAAAAGAGTCT
CAAGGGACGATGACGTAATGAAATATGtattaaaatgtatataatgttGC
GTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027542XLOC_027542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043872-exon-sc0004686-1491911889:4244..5097TCONS_00043872-exon-sc0004686-1491911889:4244..5097Clytia hemisphaericaexon
TCONS_00043872-exon-sc0004686-1510915933:4244..5097TCONS_00043872-exon-sc0004686-1510915933:4244..5097Clytia hemisphaericaexon
TCONS_00043872-exon-sc0004686-1575043694:4244..5097TCONS_00043872-exon-sc0004686-1575043694:4244..5097Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004686supercontigsc0004686:4244..5097 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.94054	4.27611	3.34681	3.7439	2.11371	1.46002	1.5558	2.68946	2.60239	3.24383	2.27831	2.731	1.35729	1.37737	0.535014	0.594133	1.01038	0.969583	1.86696	3.12911	0.691261	0.233459	0.830579	1.27776	0.562301	2.33557	0.193044	0.565026	0.644932	1.03964
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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